SPAC323.03c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC323.03c Gene Start3912648
Synonyms Gene End3910535
Productsequence orphan Gene Length2114
Feature Typeprotein coding CDS Start3912604
Name Description CDS End3910740
Characterisation Statussequence_orphan CDS Length1865

Ensembl Gene Location
  1. fas1
  2. pos5
  3. pup2
  4. SPAC323.03c
  5. SPAC323.04
  6. SPAC323.05c
  7. SPNCRNA.948
  8. uba5
  9. SPAC323.07c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC323.03cdelta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005737cytoplasmIEAUniProtKB:KW-0963GO_REF:0000037
GO:0005819spindleIDAPMID:16823372
GO:0032153cell division siteIDAPMID:16823372
GO:0044732mitotic spindle pole bodyIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
139126483912543
239125003912017
339119643911828
439117843910535

References

Region Start End Reference
three_prime_UTR39107393910535PMID:21511999
three_prime_UTR39107393910535PMID:21511999
five_prime_UTR39126483912605PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.12 Da
Charge 7.00
Isoelectric point 7.63
Molecular weight 66.19 kDa
Number of residues 575
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide129.59PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.24PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide0.65PMID:23101633
Species Distribution
DescriptionQualifierReference
identified in S. pombe only
sequence orphan
sequence orphan, uncharacterised
no apparent orthologs
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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
vph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Positive GeneticPMID:18818364
SPCC162.11curidine kinase/uracil phosphoribosyltransferase (predicted) Negative GeneticPMID:22681890
mid1medial ring protein Mid1 Negative GeneticPMID:22681890
mcs2TFIIH complex cyclin Mcs2 Negative GeneticPMID:22681890
med13mediator complex subunit Srb9 Negative GeneticPMID:18818364
med20mediator complex subunit Med20 Positive GeneticPMID:18818364
ser2phosphoserine phosphatase Ser2 (predicted) Negative GeneticPMID:18818364
cph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Positive GeneticPMID:18818364
amo1nuclear rim protein Amo1 Negative GeneticPMID:18818364
cuf2middle-meiotic transcription factor Cuf2 Negative GeneticPMID:22681890
fhl1forkhead transcription factor Fhl1 Negative GeneticPMID:22681890
mug154conserved fungal protein Positive GeneticPMID:18818364
elp6elongator complex subunit Elp6 (predicted) Positive GeneticPMID:18818364
elp1elongator subunit Elp1 (predicted) Positive GeneticPMID:18818364
ccr4CCR4-Not complex subunit Ccr4 (predicted) Positive GeneticPMID:22681890
Positive GeneticPMID:18818364
SPBC1861.07elongin C (predicted) Negative GeneticPMID:22681890
SPBC15C4.06cubiquitin-protein ligase E3 (predicted) Negative GeneticPMID:22681890
ask1DASH complex subunit Ask1 Positive GeneticPMID:18818364
snf5SWI/SNF complex subunit Snf5 Negative GeneticPMID:18818364
srb11cyclin CycC, Srb mediator subunit Srb11 Negative GeneticPMID:18818364
gcn5SAGA complex histone acetyltransferase catalytic subunit Gcn5 Negative GeneticPMID:18818364
SPBC4B4.04translation initiation factor eIF2A (predicted) Negative GeneticPMID:22681890
ppk14serine/threonine protein kinase Ppk14 (predicted) Negative GeneticPMID:22681890
ngg1SAGA complex subunit Ngg1 Negative GeneticPMID:18818364
rcd1RNA-binding protein, CCR4-NOT complex subunit Rcd1 Positive GeneticPMID:18818364
sgf29SAGA complex subunit Sgf29 Negative GeneticPMID:18818364
ryh1GTPase Ryh1 Positive GeneticPMID:18818364
syj1inositol-polyphosphate 5-phosphatase (synaptojanin homolog 1) Negative GeneticPMID:18818364
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Positive GeneticPMID:18818364
rsc1RSC complex subunit Rsc1 Positive GeneticPMID:18818364
kin1microtubule affinity-regulating kinase Kin1 Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAC323.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC323.03c Retrieval of eukaryotic orthologs
BioGrid SPAC323.03c BioGRID Interaction Datasets
Bähler Lab SPAC323.03c Cell Cycle Expression Profile
Bähler Lab SPAC323.03c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC323.03c Pheromone response/mating expression profiles
Bähler Lab SPAC323.03c Environmental stress expression profiles
Bähler Lab SPAC323.03c Bähler Lab Transcriptome Viewer
Cyclebase SPAC323.03c Cell Cycle Data
PInt SPAC323.03c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC323.03c Entrez Gene
WikiGene2543101sequence orphan
EntrezGene2543101sequence orphan
SPD / RIKEN26/26C09Orfeome Localization Data
UniProtKB/SwissProtQ9UT96Uncharacterized protein C323.03c
ModBaseQ9UT96Database of comparative protein structure models
Pfam Protein DomainsQ9UT96Pfam Domain Arrangement
RefSeq PeptideNP_594373sequence orphan
RefSeq mRNANM_001019794972h- sequence orphan (SPAC323.03c), mRNA
European Nucleotide ArchiveCAB53406ENA Protein Mapping
UniParcUPI000006C611UniProt Archive

Literature for SPAC323.03c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013