SPAC323.03c


Gene Standard NameUnassigned Characterisation StatusSchizosaccharomyces specific protein, uncharacterized
Systematic IDSPAC323.03c Feature Typeprotein coding
Synonyms Name Description
ProductSchizosaccharomyces specific protein Product Size575aa, 66.19 kDa
Genomic Location Chromosome I, 3912648-3910535 (2114nt); CDS:3912604-3910740 (1865nt)

Ensembl Gene Location
GO Cellular Component
Term NameCount
cell division site312
Annotation ExtensionEvidenceWith/FromReference
cytoplasm4209
Annotation ExtensionEvidenceWith/FromReference
mitotic spindle269
Annotation ExtensionEvidenceWith/FromReference
mitotic spindle pole body218
Annotation ExtensionEvidenceWith/FromReference
nucleus2690
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
decreased cell population growth on glucose carbon sourceSPAC323.03cΔ293
increased viability in stationary phaseSPAC323.03cΔ61
resistance to caffeine and rapamycinSPAC323.03cΔ33
viable vegetative cell populationSPAC323.03cΔ3831

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologySPAC323.03cΔ3099
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3912648..3912543, 3912500..3912017, 3911964..3911828, 3911784..3910535
Intron3912542..3912501, 3912016..3911965, 3911827..3911785
5' UTR3912648..3912605PMID:21511999
3' UTR3910739..3910535PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.12 Da
Charge 7.00
Codon Adaptation Index 0.39
Isoelectric point 7.63
Molecular weight 66.19 kDa
Number of residues 575
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for SPAC323.03c

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
129.59during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0.65during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.24during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
Schizosaccharomyces specific225
Orthologs

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load gene that interact physically with SPAC323.03c into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bycbf11CBF1/Su(H)/LAG-1 family transcription factor Cbf11 Affinity Capture-MSPMID:22540037
affinity captured byrad52DNA recombination protein, Rad51 mediator Rad52 (previously Rad22) Affinity Capture-MSPMID:23779158
affinity capturesrad52DNA recombination protein, Rad51 mediator Rad52 (previously Rad22) Affinity Capture-WesternPMID:23779158
External References
Database Identifier Description
NBRP SPAC323.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC323.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC323.03c BioGRID Interaction Datasets
Expression Viewer SPAC323.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC323.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC323.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC323.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC323.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC323.03c Transcriptome Viewer (Bähler Lab)
GEO SPAC323.03c GEO profiles
PInt SPAC323.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC323.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC323.03c Fission yeast phenotypic data & analysis
Cyclebase SPAC323.03c.1 Cell Cycle Data
SPD / RIKEN26/26C09Orfeome Localization Data
UniProtKB/SwissProtQ9UT96Uncharacterized protein C323.03c
ModBaseQ9UT96Database of comparative protein structure models
STRINGQ9UT96Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594373sequence orphan
RefSeq mRNANM_001019794972h- sequence orphan (SPAC323.03c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB53406ENA Protein Mapping
UniParcUPI000006C611UniProt Archive

Literature for SPAC323.03c

Search: Europe PMC or PubMed

Release Version: PomBase:30_57 - 27 Jan 2016