SPAC323.03c


Gene Standard NameUnassigned Characterisation StatusSchizosaccharomyces specific family
Systematic IDSPAC323.03c Feature Typeprotein coding
Synonyms Name Description
ProductSchizosaccharomyces specific protein Product Size575aa, 66.19 kDa
Genomic Location Chromosome I, 3912648-3910535 (2114nt); CDS:3912604-3910740 (1865nt)

Ensembl Gene Location
GO Cellular Component
Term NameCount
cell division site301
Annotation ExtensionEvidenceWith/FromReference
mitotic spindle257
Annotation ExtensionEvidenceWith/FromReference
mitotic spindle pole body216
Annotation ExtensionEvidenceWith/FromReference
nucleus2740
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001407decreased cell population growth on glucose carbon sourceCell growth assaySPAC323.03cΔNullPMID:24463365147
FYPO:0001309increased viability in stationary phaseCell growth assaySPAC323.03cΔNullPECO:0000137PMID:2446336553
FYPO:0003824resistance to caffeine and rapamycinCell growth assaySPAC323.03cΔNullPECO:0000137PMID:2446336533
FYPO:0002060viable vegetative cell populationMicroscopySPAC323.03cΔNullPMID:204732893759
MicroscopySPAC323.03cΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001MicroscopySPAC323.03cΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
139126483912543
239125003912017
339119643911828
439117843910535

UTRs

Region Coordinates Reference
five_prime_UTR3912648..3912605PMID:21511999
three_prime_UTR3910739..3910535PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.12 Da
Charge 7.00
Isoelectric point 7.63
Molecular weight 66.19 kDa
Number of residues 575
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
129.59during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0.65during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.24during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
Schizosaccharomyces specific222
Orthologs

Orthologs in Compara


Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
med20mediator complex subunit Med20 Positive GeneticPMID:18818364
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
mid1medial ring protein Mid1 Negative GeneticPMID:22681890
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Positive GeneticPMID:18818364
rcd1RNA-binding protein, CCR4-NOT complex subunit Rcd1 Positive GeneticPMID:18818364
elp1elongator subunit Elp1 (predicted) Positive GeneticPMID:18818364
snf5SWI/SNF complex subunit Snf5 Negative GeneticPMID:18818364
vph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Positive GeneticPMID:18818364
ask1DASH complex subunit Ask1 Positive GeneticPMID:18818364
elp6elongator complex subunit Elp6 (predicted) Positive GeneticPMID:18818364
gcn5SAGA complex histone acetyltransferase catalytic subunit Gcn5 Negative GeneticPMID:18818364
cph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Positive GeneticPMID:18818364
mug154conserved fungal protein Positive GeneticPMID:18818364
kin1microtubule affinity-regulating kinase Kin1 Negative GeneticPMID:22681890
syj1inositol-polyphosphate 5-phosphatase (synaptojanin homolog 1) Negative GeneticPMID:18818364
ppk14serine/threonine protein kinase Ppk14 (predicted) Negative GeneticPMID:22681890
amo1nuclear rim protein Amo1 Negative GeneticPMID:18818364
ccr4CCR4-Not complex subunit Ccr4 (predicted) Positive GeneticPMID:18818364
Positive GeneticPMID:22681890
sgf29SAGA complex subunit Sgf29 Negative GeneticPMID:18818364
med13mediator complex subunit Srb9 Negative GeneticPMID:18818364
SPBC1861.07elongin C (predicted) Negative GeneticPMID:22681890
SPBC15C4.06cubiquitin-protein ligase E3 (predicted) Negative GeneticPMID:22681890
ngg1SAGA complex subunit Ngg1 Negative GeneticPMID:18818364
ser2phosphoserine phosphatase Ser2 (predicted) Negative GeneticPMID:18818364
mcs2TFIIH complex cyclin Mcs2 Negative GeneticPMID:22681890
srb11cyclin CycC, Srb mediator subunit Srb11 Negative GeneticPMID:18818364
SPCC162.11curidine kinase/uracil phosphoribosyltransferase (predicted) Negative GeneticPMID:22681890
SPBC4B4.04translation initiation factor eIF2A (predicted) Negative GeneticPMID:22681890
rsc1RSC complex subunit Rsc1 Positive GeneticPMID:18818364
ryh1GTPase Ryh1 Positive GeneticPMID:18818364
fhl1forkhead transcription factor Fhl1 Negative GeneticPMID:22681890
cuf2middle-meiotic transcription factor Cuf2 Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC323.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC323.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC323.03c BioGRID Interaction Datasets
Expression Viewer SPAC323.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC323.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC323.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC323.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC323.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC323.03c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC323.03c Cell Cycle Data
GEO SPAC323.03c GEO profiles
PInt SPAC323.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC323.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC323.03c Fission yeast phenotypic data & analysis
SPD / RIKEN26/26C09Orfeome Localization Data
UniProtKB/SwissProtQ9UT96Uncharacterized protein C323.03c
ModBaseQ9UT96Database of comparative protein structure models
STRINGQ9UT96Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594373sequence orphan
RefSeq mRNANM_001019794972h- sequence orphan (SPAC323.03c), mRNA
European Nucleotide ArchiveCAB53406.1ENA Protein Mapping
UniParcUPI000006C611UniProt Archive

Literature for SPAC323.03c

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014