SPAC328.05

Synonyms ChromosomeI
ProductRNA-binding protein involved in export of mRNAs (predicted) Gene Start3484543
Feature Typeprotein coding Gene End3486956
Name Description CDS Start3484678
Characterisation Statusbiological_role_inferred CDS End3486502

Ensembl Gene Location
SPAC328.02 SPNCRNA.911 SPNCRNA.529 tps1 SPAC328.04 > SPAC328.05 < ubp2 SPAC328.07c tbc1
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
134845433484698
234847363485065
334852413485342
434853823485483
534855823485974
634860563486956

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00076 Pfam RNA recognition motif domain 312 380 72.3 70
PF00076 Pfam RNA recognition motif domain 181 249 63.3 70
PF00076 Pfam RNA recognition motif domain 79 147 54.3 70
54928 Superfamily 5 151 71.4 76
54928 Superfamily 176 385 148 76
SM00360 Smart RNA recognition motif domain 311 383 90 69
SM00360 Smart RNA recognition motif domain 180 252 89.9 69
SM00360 Smart RNA recognition motif domain 78 150 81.3 69
PS50102 PROSITE RNA recognition motif domain 77 154 14.573 72
PS50102 PROSITE RNA recognition motif domain 179 256 16.466 72
PS50102 PROSITE RNA recognition motif domain 310 387 19.058 72

Protein Properties

Ave. residue weight 111.19 Da
Charge 4.00
Isoelectric point 7.04
Molecular weight 51.59 kDa
Number of residues 464
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0016973poly(A)+ mRNA export from nucleusISS SGD:S000004949GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0016973

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusISS SGD:S000004949GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0005737cytoplasmISS SGD:S000004949GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005737
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829
GO:0030530heterogeneous nuclear ribonucleoprotein complexISS SGD:S000004949GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0030530

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0003723RNA bindingISS SGD:S000004949GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0003723

Warning

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DescriptionSourceAll Genes
gene structure updated Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000070

Protein Family

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DescriptionSourceAll Genes
rrm RNA recognition motifTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000302

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
med20mediator complex subunit Med20 Positive Genetic


External References

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Database Identifier Description
NBRP SPAC328.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC328.05 Retrieval of eukaryotic orthologs
BioGrid SPAC328.05 BioGRID Interaction Datasets
Bähler Lab SPAC328.05 Cell Cycle Expression Profile
Bähler Lab SPAC328.05 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC328.05 Pheromone response/mating expression profiles
Bähler Lab SPAC328.05 Environmental stress expression profiles
Bähler Lab SPAC328.05 Bähler Lab Transcriptome Viewer
Cyclebase SPAC328.05 Cell Cycle Data
Entrez Gene SPAC328.05 Link to Entrez Gene
SPD / RIKEN36/36E08Orfeome Localization Data
UniProtKB/SwissProtQ9P3U1Uncharacterized RNA-binding protein C328.05
ArrayExpressQ9P3U1Link to ArrayExpress
RefSeq PeptideNP_594207RNA-binding protein involved in export of mRNAs
RefSeq mRNANM_001019630972h- RNA-binding protein involved in export of mRNAs (SPAC328.05), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB96000ENA Protein Mapping
UniParcUPI000228F37BUniProt Archive

Literature for SPAC328.05

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Search: UK PMC or PubMed