SPAC328.07c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC328.07c Gene Start3492653
Synonyms Gene End3491080
Productheavy metal ion homeostasis protein (predicted) Gene Length1574
Feature Typeprotein coding CDS Start3492484
Name Description CDS End3491583
Characterisation Statusbiological_role_inferred CDS Length902

Ensembl Gene Location
  1. SPAC328.04
  2. SPAC328.05
  3. ubp2
  4. SPAC328.07c
  5. tbc1
  6. SPAC328.09
  7. rps502
  8. SPNCRNA.222
  9. SPNCRNA.912
  10. SPNCRNA.913
  11. shd1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC328.07cdelta (deletion)deletionPMID:20473289
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006623protein targeting to vacuoleISOSGD:S000000494GO_REF:0000024
GO:0006875cellular metal ion homeostasisICGO:0030001GO_REF:0000001
GO:0010959regulation of metal ion transportISOSGD:S000000494GO_REF:0000024
GO:0033554cellular response to stressIEPPMID:12529438
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005773vacuoleIEASL-0272GO_REF:0000039
GO:0005783endoplasmic reticulumISOSGD:S000000494GO_REF:0000024
GO:0005789endoplasmic reticulum membraneICGO:0016020, GO:0005783GO_REF:0000001
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
134926533492467
234923983491080

References

Region Start End Reference
three_prime_UTR34915823491080PMID:21511999
three_prime_UTR34915823491080PMID:21511999
five_prime_UTR34926533492485PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF10176 IPR019325 Pfam NEDD4/BSD2 220 267 1
PF10176 IPR019325 Pfam NEDD4/BSD2 79 218 1
TMhelix TMHMM 232 254 955
TMhelix TMHMM 161 183 955

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:19547744

Sequence Ontology

Term IDTerm NameReference
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 110.34 Da
Charge -22.00
Isoelectric point 4.11
Molecular weight 30.56 kDa
Number of residues 277
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.1PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide3PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC328.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC328.07c Retrieval of eukaryotic orthologs
BioGrid SPAC328.07c BioGRID Interaction Datasets
Bähler Lab SPAC328.07c Cell Cycle Expression Profile
Bähler Lab SPAC328.07c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC328.07c Pheromone response/mating expression profiles
Bähler Lab SPAC328.07c Environmental stress expression profiles
Bähler Lab SPAC328.07c Bähler Lab Transcriptome Viewer
Cyclebase SPAC328.07c Cell Cycle Data
PInt SPAC328.07c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC328.07c Entrez Gene
WikiGene2543206heavy metal ion homeostasis protein (predicted)
Uniprot_genenameBSD2
EntrezGene2543206heavy metal ion homeostasis protein (predicted)
UniProtKB/SwissProtQ9P3T9Probable metal homeostasis protein bsd2
ModBaseQ9P3T9Database of comparative protein structure models
Pfam Protein DomainsQ9P3T9Pfam Domain Arrangement
RefSeq PeptideNP_594209heavy metal ion homeostasis protein (predicted)
RefSeq mRNANM_001019632972h- heavy metal ion homeostasis protein (predicted) (SPAC328.07c), mRNA
European Nucleotide ArchiveCAB96002ENA Protein Mapping
SPD / RIKEN12/12D06Orfeome Localization Data
UniParcUPI000006A725UniProt Archive

Literature for SPAC328.07c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013