SPAC343.17c

Synonyms ChromosomeI
ProductWD repeat protein, human WDR70 family Gene Start1680143
Feature Typeprotein coding Gene End1673685
Name Description CDS Start1679968
Characterisation Statusconserved_unknown CDS End1678182

Ensembl Gene Location
rds1 SPAC343.20 SPAC343.13 SPAC343.14c > SPAC343.17c < tit1 lys2 rfp2 lsb6
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
116801431679699
216796421673685

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00400 Pfam WD40 repeat 84 117 26.8 107
PF00400 Pfam WD40 repeat 299 326 24.3 107
PF00400 Pfam WD40 repeat 193 226 21.4 107
PF00400 Pfam WD40 repeat 252 278 15.3 107
50978 Superfamily 67 424 125.3 127
SM00320 Smart WD40 repeat 78 117 37.4 121
SM00320 Smart WD40 repeat 284 326 30.7 121
SM00320 Smart WD40 repeat 183 226 30.7 121
SM00320 Smart WD40 repeat 230 279 23.1 121
PS50082 PROSITE WD40 repeat 85 119 12.848 100
PS50082 PROSITE WD40 repeat 193 235 11.411 100
PS50082 PROSITE WD40 repeat 301 335 12.413 100
PS50294 PROSITE WD40-repeat-containing domain 85 126 11.946 104
PS50294 PROSITE WD40-repeat-containing domain 193 335 18.589 104
PR00320 Prints G-protein beta WD-40 repeat 104 118 34.32 43
PR00320 Prints G-protein beta WD-40 repeat 213 227 30.75 43
PR00320 Prints G-protein beta WD-40 repeat 313 327 35.74 43

Protein Properties

Ave. residue weight 110.53 Da
Charge -2.50
Isoelectric point 6.16
Molecular weight 63.66 kDa
Number of residues 576
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000049inviableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000049

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0000132establishment of mitotic spindle orientationISS wormbase_gene:WBGene00001513GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0000132

Protein Family

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DescriptionSourceAll Genes
WD repeat proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000190

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Interactions

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Physical Interactions from BioGRID

Gene Feature Evidence Source
prp19ubiquitin-protein ligase E4 Affinity Capture-MS
prp17splicing factor Prp17 Affinity Capture-MS

External References

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Database Identifier Description
NBRP SPAC343.17c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC343.17c Retrieval of eukaryotic orthologs
BioGrid SPAC343.17c BioGRID Interaction Datasets
Bähler Lab SPAC343.17c Cell Cycle Expression Profile
Bähler Lab SPAC343.17c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC343.17c Pheromone response/mating expression profiles
Bähler Lab SPAC343.17c Environmental stress expression profiles
Bähler Lab SPAC343.17c Bähler Lab Transcriptome Viewer
Cyclebase SPAC343.17c Cell Cycle Data
Entrez Gene SPAC343.17c Link to Entrez Gene
SPD / RIKEN45/45H03Orfeome Localization Data
UniProtKB/SwissProtQ9UT73Uncharacterized WD repeat-containing protein C343.17c
ArrayExpressQ9UT73Link to ArrayExpress
RefSeq PeptideNP_593438WD repeat-containing protein
RefSeq mRNANM_001018869972h- tRNA isopentenyltransferase (tit1), mRNA
RefSeq mRNANM_001018870972h- homoaconitate hydratase Lys2 (lys2), mRNA
RefSeq mRNANM_001018871972h- WD repeat-containing protein (SPAC343.17c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB52280ENA Protein Mapping
UniParcUPI000006C3E2UniProt Archive

Literature for SPAC343.17c

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Search: UK PMC or PubMed