cam1 (SPAC3A12.14)


Gene Standard Namecam1 Characterisation Statuspublished
Systematic IDSPAC3A12.14 Feature Typeprotein coding
Synonyms Name Description
Productcalmodulin Cam1 Product Size150aa, 16.91 kDa
Genomic Location Chromosome I, 1444658-1446333 (1676nt); CDS:1444930-1445508 (579nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
calcium ion binding39
Annotation ExtensionEvidenceWith/FromReference
protein binding863
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
ascospore formation62
Annotation ExtensionEvidenceWith/FromReference
ascospore-type prospore-specific spindle pole body remodeling9
Annotation ExtensionEvidenceWith/FromReference
maintenance of protein location in spindle pole body1
Annotation ExtensionEvidenceWith/FromReference
mitotic spindle assembly17
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
barrier septum22
Annotation ExtensionEvidenceWith/FromReference
cell division site309
Annotation ExtensionEvidenceWith/FromReference
cytosol2307
Annotation ExtensionEvidenceWith/FromReference
mitotic spindle pole body216
Annotation ExtensionEvidenceWith/FromReference
new growing cell tip4
Annotation ExtensionEvidenceWith/FromReference
nucleus2691
Annotation ExtensionEvidenceWith/FromReference
old growing cell tip6
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Single-allele Phenotypes

Population Phenotype

Term NameGenotypesCount
decreased cell population growth at high temperatureE13 (E67V, E140V)155
E1 (E67V, E104V, E140V)
E4 (E31V, E67V, E104V)
E34 (E31V, E67V)
E14 (E67V, E104V)
decreased sporulation frequencycam1-S116 (R116S)95
cam1-D116 (R116D)
cam1-F116 (R116F)
inviable vegetative cell populationE4 (E31V, E67V, E104V)1444
E3 (E31V, E67V, E140V)
cam1Δ
E0 (E31V, E67V, E104V, E140V)
normal vegetative cell population growth ratecam1-F116 (R116F)77
sensitive to 4-amino-1-methyl-1H-imidazole-5-carboselenoamidecam1+/cam1- (heterozygous diploid)8
sensitive to tingenonecam1+/cam1- (heterozygous diploid)7
viable vegetative cell populationE234 (E31V)3819
E124 (E104V)
E24 (E31V, E104V)
E4 (E31V, E67V, E104V)
E23 (E31V, E140V)
E12 (E104, E140V)
E2 (E31V, E104V, E140V)
E134 (E67V)
E13 (E67V, E140V)
E123 (E140V)
E14 (E67V, E104V)
E1 (E67V, E104V, E140V)

Cell Phenotype

Term NameGenotypesCount
abnormal mitotic chromosome congressionE14 (E67V, E104V)1
abnormal mitotic spindleE14 (E67V, E104V)60
abolished mitotic sister chromatid separationE14 (E67V, E104V)28
decreased protein level during vegetative growth102
affecting cam1cam1-F116 (R116F)
increased protein degradation during nitrogen starvation1
affecting cam1cam1-F116 (R116F)
inviable after spore germinationcam1Δ805
inviable cell at high temperatureE34 (E31V, E67V)21
E1 (E67V, E104V, E140V)
E4 (E31V, E67V, E104V)
E13 (E67V, E140V)
inviable sporecam1Δ474
inviable vegetative cellE4 (E31V, E67V, E104V)1337
E3 (E31V, E67V, E140V)
E0 (E31V, E67V, E104V, E140V)
mitotic chromosome fragmentation upon segregationE14 (E67V, E104V)5
mitotic metaphase/anaphase transition delayE14 (E67V, E104V)16
normal conjugationcam1-F116 (R116F)46
normal cytosolic calcium levelcam1-12
normal interphase cytoplasmic microtubulesE14 (E67V, E104V)8
normal meiosiscam1-F116 (R116F)148
normal RNA level during vegetative growth108
affecting cam1cam1-F116 (R116F)
viable cell at high temperatureE2 (E31V, E104V, E140V)8
E14 (E67V, E104V)
E134 (E67V)
E123 (E140V)
E12 (E104, E140V)
E23 (E31V, E140V)
E124 (E104V)
E234 (E31V)
E24 (E31V, E104V)
viable cell at low temperatureE24 (E31V, E104V)2
E234 (E31V)
E4 (E31V, E67V, E104V)
E23 (E31V, E140V)
E123 (E140V)
E34 (E31V, E67V)
E134 (E67V)
E124 (E104V)
E1 (E67V, E104V, E140V)
E14 (E67V, E104V)
E2 (E31V, E104V, E140V)
E13 (E67V, E140V)
E12 (E104, E140V)
viable vegetative cellE23 (E31V, E140V)3641
E14 (E67V, E104V)
E13 (E67V, E140V)
E134 (E67V)
E34 (E31V, E67V)
E12 (E104, E140V)
E123 (E140V)
E24 (E31V, E104V)
E1 (E67V, E104V, E140V)
E234 (E31V)
E2 (E31V, E104V, E140V)
E124 (E104V)
Target Of
OntologyRelationshipGeneProduct
FYPO affected by mutation in cam1 calmodulin Cam1
FYPO affected by mutation in cmk1 calcium/calmodulin-dependent protein kinase Cmk1
FYPO affected by mutation in prp2 U2AF large subunit (U2AF-59)
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons1444658..1444932, 1445059..1446333
Intron1444933..1445058
mRNA1444658..1446333
5' UTR1444658..1444929PMID:21511999
CDS1444930..1444932, 1445059..1445508
3' UTR1445509..1446333PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF13499 Pfam IPR011992 EF-hand domain pair 15 74 8
PF13499 Pfam IPR011992 EF-hand domain pair 88 144 8
SM00054 SMART IPR002048 EF-hand domain 49 77 9
SM00054 SMART IPR002048 EF-hand domain 122 150 9
SM00054 SMART IPR002048 EF-hand domain 13 41 9
SM00054 SMART IPR002048 EF-hand domain 86 114 9
PS50222 Prosite Profiles IPR002048 EF-hand domain 118 150 20
PS50222 Prosite Profiles IPR002048 EF-hand domain 9 44 20
PS50222 Prosite Profiles IPR002048 EF-hand domain 82 117 20
PS50222 Prosite Profiles IPR002048 EF-hand domain 45 80 20
PS00018 Prosite Patterns IPR018247 EF-Hand 1, calcium-binding site 58 70 12
PS00018 Prosite Patterns IPR018247 EF-Hand 1, calcium-binding site 22 34 12
PS00018 Prosite Patterns IPR018247 EF-Hand 1, calcium-binding site 95 107 12
PS00018 Prosite Patterns IPR018247 EF-Hand 1, calcium-binding site 131 143 12
PTHR23050 HMMPANTHER 4 150 3
1.10.238.10 Gene3D IPR011992 EF-hand domain pair 71 148 20
1.10.238.10 Gene3D IPR011992 EF-hand domain pair 5 70 20
SSF47473 SuperFamily 3 147 21

View domain organization at Pfam

Term IDTerm NameReferenceCount
PBO:0000276EF handTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000276
PBO:0000979calmodulin familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000979

Protein Properties

Ave. residue weight 112.70 Da
Charge -20.50
Isoelectric point 3.90
Molecular weight 16.91 kDa
Number of residues 150
Modifications

Protein Modifications

Term NameResidueCount
phosphorylated residue 1930
Annotation ExtensionEvidenceResidueReference
IDA PMID:19547744
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelpresent during GO:0072690Northern assay evidencePMID:3035538

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
167122during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
157242during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
165055during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
153299during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
25597.96during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
160857during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
39964.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
8.9during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Complementation
DescriptionQualifierReference
functionally complemented by vertebrate vCaMfull PMID:7657644
functionally complements S. cerevisiae CMD1full PMID:7657644
is not functionally complemented by S. cerevisiae CMD1full PMID:7657644
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4604
conserved in eukaryotes4514
conserved in metazoa3421
conserved in vertebrates3396
conserved in eukaryotes only2503
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load gene that interact physically with SPAC3A12.14 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
forms complex withmob1Sid2-Mob1 kinase complex regulatory subunit Mob1 Reconstituted ComplexPMID:15004232
forms complex withpcp1pericentrin Pcp1 Reconstituted ComplexPMID:11864908
affinity captured bymyo1myosin type I Affinity Capture-WesternPMID:11260263
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured byrng2IQGAP Affinity Capture-WesternPMID:9635188
affinity capturesrng2IQGAP Affinity Capture-WesternPMID:9635188
binds DNA-binding domain construct withmyo52myosin type V Two-hybridPMID:18003699
Genetic Interactions

Source: BioGRID

Load gene that interact geneitically with SPAC3A12.14 into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
rescued byspo15sporulation protein Spo15 Phenotypic SuppressionPMID:20833892
External References
Database Identifier Description
NBRP SPAC3A12.14 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3A12.14 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC3A12.14 BioGRID Interaction Datasets
Expression Viewer SPAC3A12.14 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC3A12.14 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC3A12.14 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC3A12.14 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC3A12.14 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC3A12.14 Transcriptome Viewer (Bähler Lab)
GEO SPAC3A12.14 GEO profiles
PInt SPAC3A12.14 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC3A12.14 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC3A12.14 Fission yeast phenotypic data & analysis
Cyclebase SPAC3A12.14.1 Cell Cycle Data
SPD / RIKEN06/06C03Orfeome Localization Data
UniProtKB/SwissProtP05933Calmodulin
ModBaseP05933Database of comparative protein structure models
STRINGP05933Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593340calmodulin Cam1
RefSeq mRNANM_001018772972h- calmodulin Cam1 (cam1), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveM16475ENA EMBL mapping
European Nucleotide ArchiveAAA35291ENA Protein Mapping
European Nucleotide ArchiveAAA35291.1ENA Protein Mapping
European Nucleotide ArchiveCAB08742ENA Protein Mapping
European Nucleotide ArchiveCAB08742.1ENA Protein Mapping
UniParcUPI0000126E6AUniProt Archive

Literature for cam1

Search: Europe PMC or PubMed

Release Version: PomBase:29_56 - 12 Nov 2015