Gene Standard NameUnassigned Characterisation Statusbiological role inferred
Systematic IDSPAC3C7.07c Feature Typeprotein coding
Synonyms Name Description
Productarginine-tRNA protein transferase (predicted) Product Size391aa, 45.09 kDa
Genomic Location Chromosome I, 2078889-2077107 (1783nt); CDS:2078730-2077280 (1451nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
arginyltransferase activity1
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
protein arginylation1
Annotation ExtensionEvidenceWith/FromReference
NOT tRNA metabolic process
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
increased cell population growth rateSPAC3C7.07cΔ256
viable vegetative cell populationSPAC3C7.07cΔ3862

Cell Phenotype

Term NameGenotypesCount
decreased protein degradation via N-end rule pathway during vegetative growthSPAC3C7.07cΔ4
viable vegetative cell with normal cell morphologySPAC3C7.07cΔ3103
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2078889..2078614, 2078559..2078528, 2078486..2078421, 2078366..2077843, 2077796..2077726, 2077684..2077424, 2077384..2077107
Intron2078613..2078560, 2078527..2078487, 2078420..2078367, 2077842..2077797, 2077725..2077685, 2077423..2077385
5' UTR2078889..2078731PMID:21511999
CDS2078730..2078614, 2078559..2078528, 2078486..2078421, 2078366..2077843, 2077796..2077726, 2077684..2077424, 2077384..2077280
3' UTR2077279..2077107PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04377 Pfam IPR007472 Arginine-tRNA-protein transferase, C-terminal 139 268 1
PF04376 Pfam IPR007471 Arginine-tRNA-protein transferase, N-terminal 16 86 1
PTHR21367:SF1 HMMPANTHER 8 390 1
PTHR21367 HMMPANTHER IPR030700 Arginine-tRNA-protein transferase 8 390 1
SSF55729 SuperFamily IPR016181 Acyl-CoA N-acyltransferase 125 272 26

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.33 Da
Charge 6.00
Codon Adaptation Index 0.42
Isoelectric point 7.88
Molecular weight 45.09 kDa
Number of residues 391
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for SPAC3C7.07c

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3153during GO:0000084PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
3370during GO:0000087PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
3754during GO:0072690PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
6633.77during GO:0072690PECO:0000126,
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.3during GO:0072690PECO:0000126,
population wideexperimental evidencePMID:23101633
0.45during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633
gene structure updated PMID:21511999435
Taxonomic Conservation
predominantly single copy (one to one)3087
conserved in fungi4608
conserved in eukaryotes4516
conserved in bacteria1005
conserved in metazoa3498
conserved in vertebrates3473

Manually curated orthologous groups


Orthologs in Compara

Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPAC3C7.07c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
positive genetic interaction withclg1cyclin Clg1 (predicted) Positive GeneticPMID:22681890
positive genetic interaction withusp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC3C7.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3C7.07c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC3C7.07c BioGRID Interaction Datasets
Expression Viewer SPAC3C7.07c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC3C7.07c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC3C7.07c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC3C7.07c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC3C7.07c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC3C7.07c Transcriptome Viewer (Bähler Lab)
GEO SPAC3C7.07c GEO profiles
PInt SPAC3C7.07c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC3C7.07c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC3C7.07c Fission yeast phenotypic data & analysis
Cyclebase SPAC3C7.07c.1 Cell Cycle Data
IntEnz2.3.2.8Integrated relational Enzyme database
Rhea2.3.2.8Annotated reactions database
SPD / RIKEN44/44F12Orfeome Localization Data
UniProtKB/SwissProtO14133Arginyl-tRNA--protein transferase 1
ModBaseO14133Database of comparative protein structure models
STRINGO14133Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593608arginine-tRNA protein transferase (predicted)
RefSeq mRNANM_001019039972h- arginine-tRNA protein transferase (predicted) (SPAC3C7.07c), mRNA
European Nucleotide ArchiveCAB16746.2ENA Protein Mapping
UniParcUPI000228F47FUniProt Archive

Literature for SPAC3C7.07c

Search: Europe PMC or PubMed

Release Version: PomBase:30_62 - 30 Jan 2017