SPAC3C7.07c


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPAC3C7.07c Feature Typeprotein coding
Synonyms Name Description
Productarginine-tRNA protein transferase (predicted) Product Size391aa, 45.09 kDa
Genomic Location Chromosome I, 2078889-2077107 (1783nt); CDS:2078730-2077280 (1451nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
arginyltransferase activity1
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
protein arginylation1
Annotation ExtensionEvidenceWith/FromReference
NOT tRNA metabolic process
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytoplasm4208
Annotation ExtensionEvidenceWith/FromReference
cytosol2314
Annotation ExtensionEvidenceWith/FromReference
nucleus2695
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
increased cell population growth rateSPAC3C7.07cΔNull246
viable vegetative cell populationSPAC3C7.07cΔNull3809

Cell Phenotype

Term NameAlleleExpressionCount
decreased protein degradation via N-end rule pathway during vegetative growthSPAC3C7.07cΔNull4
viable vegetative cell with normal cell morphologySPAC3C7.07cΔNull3093
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2078889..2078614, 2078559..2078528, 2078486..2078421, 2078366..2077843, 2077796..2077726, 2077684..2077424, 2077384..2077107
mRNA2078889..2077107
5' UTR2078889..2078731PMID:21511999
CDS2078730..2078614, 2078559..2078528, 2078486..2078421, 2078366..2077843, 2077796..2077726, 2077684..2077424, 2077384..2077280
3' UTR2077279..2077107PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04376 Pfam IPR007471 Arginine-tRNA-protein transferase, N-terminal 11 86 1
PF04377 Pfam IPR007472 Arginine-tRNA-protein transferase, C-terminal 138 272 1
PTHR21367:SF0 HMMPANTHER IPR030700 Arginine-tRNA-protein transferase 8 390 1
PTHR21367 HMMPANTHER 8 390 1
SSF55729 SuperFamily IPR016181 Acyl-CoA N-acyltransferase 125 272 26

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.33 Da
Charge 6.00
Isoelectric point 7.88
Molecular weight 45.09 kDa
Number of residues 391
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3153during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
3370during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
3754during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
6633.77during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.3during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
0.45during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21511999433
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4603
conserved in eukaryotes4514
conserved in bacteria1001
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
positive genetic interaction withmug80cyclin Clg1 (predicted) Positive GeneticPMID:22681890
positive genetic interaction withusp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC3C7.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3C7.07c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC3C7.07c BioGRID Interaction Datasets
Expression Viewer SPAC3C7.07c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC3C7.07c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC3C7.07c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC3C7.07c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC3C7.07c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC3C7.07c Transcriptome Viewer (Bähler Lab)
GEO SPAC3C7.07c GEO profiles
PInt SPAC3C7.07c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC3C7.07c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC3C7.07c Fission yeast phenotypic data & analysis
Cyclebase SPAC3C7.07c.1 Cell Cycle Data
IntEnz2.3.2.8Integrated relational Enzyme database
Rhea2.3.2.8Annotated reactions database
SPD / RIKEN44/44F12Orfeome Localization Data
UniProtKB/SwissProtO14133Arginyl-tRNA--protein transferase 1
ModBaseO14133Database of comparative protein structure models
STRINGO14133Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593608arginine-tRNA protein transferase (predicted)
RefSeq mRNANM_001019039972h- arginine-tRNA protein transferase (predicted) (SPAC3C7.07c), mRNA
European Nucleotide ArchiveCAB16746.2ENA Protein Mapping
UniParcUPI000228F47FUniProt Archive

Literature for SPAC3C7.07c

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015