SPAC3C7.07c


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPAC3C7.07c Feature Typeprotein coding
Synonyms Name Description
Productarginine-tRNA protein transferase (predicted) Product Size391aa, 45.09 kDa
Genomic Location Chromosome I, 2078889-2077107 (1783nt); CDS:2078730-2077280 (1451nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0004057arginyltransferase activityISOSGD:S000002985GO_REF:00000241
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0016598protein arginylationISOSGD:S000002985GO_REF:00000241
NOT GO:0006399tRNA metabolic processNASGO_REF:0000001
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005737cytoplasmISOSGD:S000002985GO_REF:00000244204
GO:0005829cytosolIDAPMID:168233722319
GO:0005634nucleusIDAPMID:168233722737
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPAC3C7.07cΔNullPECO:0000005, PECO:0000137PMID:236978063751
MicroscopySPAC3C7.07cΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0003300decreased protein degradation via N-end rule pathway during vegetative growth4
expressivity FYPO_EXT:0000001Western blot assaySPAC3C7.07cΔNullPMID:23348717
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001MicroscopySPAC3C7.07cΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
120788892078614
220785592078528
320784862078421
420783662077843
520777962077726
620776842077424
720773842077107
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04377 Pfam IPR007472 Arginine-tRNA-protein transferase, C-terminal 138 272 1
PF04376 Pfam IPR007471 Arginine-tRNA-protein transferase, N-terminal 11 86 1
PTHR21367:SF0 HMMPANTHER 8 390 1
PTHR21367 HMMPANTHER 8 390 1
SSF55729 SuperFamily IPR016181 Acyl-CoA N-acyltransferase 125 272 26
PIRSF037207 PIRSF IPR017137 Arginine-tRNA-protein transferase 1, eukaryotic 1 390 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.33 Da
Charge 6.00
Isoelectric point 7.88
Molecular weight 45.09 kDa
Number of residues 391
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3153during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
3370during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
6633.77during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
3754during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.3during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.45during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21511999432
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4599
conserved in eukaryotes4514
conserved in bacteria1002
conserved in metazoa3428
conserved in vertebrates3402
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
mug80cyclin Clg1 (predicted) Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC3C7.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3C7.07c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC3C7.07c BioGRID Interaction Datasets
Expression Viewer SPAC3C7.07c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC3C7.07c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC3C7.07c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC3C7.07c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC3C7.07c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC3C7.07c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC3C7.07c Cell Cycle Data
GEO SPAC3C7.07c GEO profiles
PInt SPAC3C7.07c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC3C7.07c Peptides identified in tandem mass spectrometry proteomics experiments
IntEnz2.3.2.8Integrated relational Enzyme database
Rhea2.3.2.8Annotated reactions database
SPD / RIKEN44/44F12Orfeome Localization Data
UniProtKB/SwissProtO14133Arginyl-tRNA--protein transferase 1
ModBaseO14133Database of comparative protein structure models
STRINGO14133Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593608arginine-tRNA protein transferase (predicted)
RefSeq mRNANM_001019039972h- arginine-tRNA protein transferase (predicted) (SPAC3C7.07c), mRNA
European Nucleotide ArchiveCAB16746.2ENA Protein Mapping
UniParcUPI000228F47FUniProt Archive

Literature for SPAC3C7.07c

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014