erf4 (SPAC3F10.07c)

Gene Standard Nameerf4 ChromosomeI
Systematic IDSPAC3F10.07c Gene Start2829184
Synonymsmug91 Gene End2828666
Productpalmitoyltransferase complex subunit Erf4 (predicted) Gene Length519
Feature Typeprotein coding CDS Start2829184
Name Description CDS End2828666
Characterisation Statusbiological_role_inferred CDS Length519

Ensembl Gene Location
  1. grs1
  2. gsa1
  3. mug113
  4. SPAC3F10.06c
  5. erf4
  6. SPNCRNA.855
  7. spd2
  8. SPAC3F10.08c
  9. SPAC3F10.09
  10. map3
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0019706protein-cysteine S-palmitoleyltransferase activity
contributes_toISOSGD:S000005470GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006612protein targeting to membraneISOSGD:S000005470GO_REF:0000024
GO:0018345protein palmitoylationISOSGD:S000005470GO_REF:0000024
GO:0090002establishment of protein localization to plasma membraneICGO:0018345GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0031211endoplasmic reticulum palmitoyltransferase complexISOSGD:S000005470GO_REF:0000024
GO:0042406extrinsic to endoplasmic reticulum membraneISOSGD:S000005470GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
128291842828666
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF10256 IPR019383 Pfam Golgin subfamily A member 7/ERF4 3 115 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.93 Da
Charge 1.00
Isoelectric point 6.72
Molecular weight 19.60 kDa
Number of residues 172
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.6PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide3.6PMID:23101633
Genome Organisation
DescriptionQualifierReference
co-expressed with adjacent geneInferred from Sequence or Structural Similarity
Warning
DescriptionQualifierReference
previously annotated as dubious
protein coding overlap with adjacent gene
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
prz1calcineurin responsive transcription factor Prz1 Negative GeneticPMID:22681890
prw1Clr6 histone deacetylase complex subunit Prw1 Negative GeneticPMID:22681890
prp4serine/threonine protein kinase Prp4 Negative GeneticPMID:22681890
ste6guanyl-nucleotide exchange factor Ste6 Negative GeneticPMID:22681890
atb2tubulin alpha 2 Negative GeneticPMID:22681890
sty1MAP kinase Sty1 Negative GeneticPMID:22681890
ste20Rictor homolog, Ste20 Negative GeneticPMID:22681890
hip1hira protein, histone chaperone Hip1 Negative GeneticPMID:22681890
cid12poly(A) polymerase Cid12 Positive GeneticPMID:22681890
atp11F1-ATPase chaperone Atp11 (predicted) Positive GeneticPMID:22681890
usp102U1 snRNP-associated protein Usp102 Negative GeneticPMID:22681890
rsv2transcription factor Rsv2 Negative GeneticPMID:22681890
dbr1RNA lariat debranching enzyme Dbr1 Negative GeneticPMID:22681890
ccr4CCR4-Not complex subunit Ccr4 (predicted) Positive GeneticPMID:22681890
sts5RNB-like protein Positive GeneticPMID:22681890
snf5SWI/SNF complex subunit Snf5 Negative GeneticPMID:22681890
SPAC144.17c6-phosphofructo-2-kinase (predicted) Negative GeneticPMID:22681890
atg6beclin family protein, involved in autophagy Positive GeneticPMID:22681890
arp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:22681890
pnk1DNA kinase/phosphatase Pnk1 Negative GeneticPMID:22681890
tor1phosphatidylinositol kinase Tor1 Negative GeneticPMID:22681890
mrc1mediator of replication checkpoint 1 Negative GeneticPMID:22681890
lub1WD repeat protein Lub1 Negative GeneticPMID:22681890
ptc1protein phosphatase 2C Ptc1 Negative GeneticPMID:22681890
ace2transcription factor Ace2 Negative GeneticPMID:22681890
erg31C-5 sterol desaturase Erg31 Negative GeneticPMID:22681890
pst2Clr6 histone deacetylase complex subunit Pst2 Negative GeneticPMID:22681890
SPAC821.05translation initiation factor eIF3h (p40) Negative GeneticPMID:22681890
rxt2histone deacetylase complex subunit Rxt2 Negative GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
srb10cyclin-dependent protein Srb mediator subunit kinase Srb10 Positive GeneticPMID:22681890
SPAC144.05ATP-dependent DNA helicase (predicted) Positive GeneticPMID:22681890
res2MBF transcription factor complex subunit Res2 Positive GeneticPMID:22681890
mpr1histidine-containing response regulator phosphotransferase Mpr1 Negative GeneticPMID:22681890
SPBC1773.02cthioredoxin peroxidase (predicted) Positive GeneticPMID:22681890
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Negative GeneticPMID:22681890
int6eIF3e subunit Int6 Negative GeneticPMID:22681890
ssp2serine/threonine protein kinase Ssp2 Positive GeneticPMID:22681890
hip4histone promoter control protein Hip4 Negative GeneticPMID:22681890
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
crp79poly(A) binding protein Crp79 Affinity Capture-RNAPMID:20531409
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External References
Database Identifier Description
NBRP SPAC3F10.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3F10.07c Retrieval of eukaryotic orthologs
BioGrid SPAC3F10.07c BioGRID Interaction Datasets
Bähler Lab SPAC3F10.07c Cell Cycle Expression Profile
Bähler Lab SPAC3F10.07c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC3F10.07c Pheromone response/mating expression profiles
Bähler Lab SPAC3F10.07c Environmental stress expression profiles
Bähler Lab SPAC3F10.07c Bähler Lab Transcriptome Viewer
Cyclebase SPAC3F10.07c Cell Cycle Data
PInt SPAC3F10.07c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC3F10.07c Entrez Gene
WikiGene2543113palmitoyltransferase complex Erf4 (predicted)
Uniprot_genenameERF4
EntrezGene2543113palmitoyltransferase complex Erf4 (predicted)
SPD / RIKEN05/05B06Orfeome Localization Data
UniProtKB/SwissProtQ10182Ras modification protein erf4
ModBaseQ10182Database of comparative protein structure models
Pfam Protein DomainsQ10182Pfam Domain Arrangement
RefSeq PeptideNP_593939palmitoyltransferase complex Erf4 (predicted)
RefSeq mRNANM_001019367972h- palmitoyltransferase complex Erf4 (predicted) (mug91), mRNA
European Nucleotide ArchiveCAA93305ENA Protein Mapping
SPD / RIKEN05/05B06Orfeome Localization Data

Literature for erf4
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013