SPAC3H5.09c


Gene Standard NameUnassigned Characterisation Statusconserved unknown
Systematic IDSPAC3H5.09c Feature Typeprotein coding
Synonyms Name Description
Productconserved eukaryotic mitochondrial protein (predicted) Product Size2699aa, 311.84 kDa
Genomic Location Chromosome I, 3416544-3425062 (8519nt); CDS:3416722-3424821 (8100nt)

Ensembl Gene Location
GO Cellular Component
Term NameCount
integral component of membrane968
Annotation ExtensionEvidenceWith/FromReference
mitochondrion752
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Single-allele Phenotypes

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationSPAC3H5.09cΔ3819

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell, abnormal cell shape, normal cell sizeSPAC3H5.09cΔ215
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3416544..3425062
mRNA3416544..3425062
5' UTR3416544..3416721PMID:21511999
CDS3416722..3424821
3' UTR3424822..3425062PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF10344 Pfam IPR019439 FMP27, N-terminal 34 808 1
PF10305 Pfam IPR019415 FMP27, SW domain 1054 1155 1
PF10293 Pfam IPR019409 FMP27, domain of unknown function DUF2405 827 975 1
PF10351 Pfam IPR019443 FMP27, C-terminal 2089 2547 1
PF10359 Pfam IPR019449 FMP27, WPPW domain 1588 2073 1
PF10347 Pfam IPR019441 FMP27, GFWDK domain 1174 1330 1
TMhelix TMHMM 24 46 959
PTHR15678 HMMPANTHER 13 1009 1
PTHR15678 HMMPANTHER 1031 2674 1
PTHR15678:SF6 HMMPANTHER 13 1009 1
PTHR15678:SF6 HMMPANTHER 1031 2674 1
Coil ncoils Predicted coiled-coil protein (DUF2205) 2561 2581 1048
Coil ncoils Predicted coiled-coil protein (DUF2205) 304 324 1048
Coil ncoils Predicted coiled-coil protein (DUF2205) 1786 1813 1048
Coil ncoils Predicted coiled-coil protein (DUF2205) 1759 1779 1048

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.54 Da
Charge 41.50
Isoelectric point 7.61
Molecular weight 311.84 kDa
Number of residues 2699
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1674
present during mitotic M phaseS1041
present during mitotic M phaseS1028
S1028, S2451
present during mitotic M phaseS2451
Annotation ExtensionEvidenceResidueReference
experimental evidence S1028 PMID:24763107
present during mitotic M phase experimental evidence S1028 PMID:21712547
present during mitotic M phase experimental evidence S1041 PMID:21712547
experimental evidence S2451 PMID:24763107
present during mitotic M phase experimental evidence S2451 PMID:21712547
O-phospho-L-threonine 699
present during mitotic M phaseT2456
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence T2456 PMID:21712547
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
289during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
246during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
357during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
273during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
287.61during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
314during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.9during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.88during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21511999433
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3090
conserved in fungi4604
conserved in eukaryotes4514
conserved in metazoa3421
conserved in vertebrates3396
conserved in eukaryotes only2503
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPAC3H5.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3H5.09c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC3H5.09c BioGRID Interaction Datasets
Expression Viewer SPAC3H5.09c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC3H5.09c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC3H5.09c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC3H5.09c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC3H5.09c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC3H5.09c Transcriptome Viewer (Bähler Lab)
GEO SPAC3H5.09c GEO profiles
PInt SPAC3H5.09c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC3H5.09c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC3H5.09c Fission yeast phenotypic data & analysis
Cyclebase SPAC3H5.09c.1 Cell Cycle Data
SPD / RIKEN51/51F02Orfeome Localization Data
UniProtKB/SwissProtQ6LA55UPF0648 protein C3H5.09c
ModBaseQ6LA55Database of comparative protein structure models
STRINGQ6LA55Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594183conserved eukaryotic mitochondrial protein (predicted)
RefSeq mRNANM_001019607972h- conserved eukaryotic mitochondrial protein (predicted) (SPAC3H5.09c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB16593ENA Protein Mapping
European Nucleotide ArchiveCAB16593.2ENA Protein Mapping
UniParcUPI000228F36CUniProt Archive

Literature for SPAC3H5.09c

Search: Europe PMC or PubMed

Release Version: PomBase:29_56 - 12 Nov 2015