SPAC3H5.09c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC3H5.09c Gene Start3416544
Synonyms Gene End3425062
Productconserved eukaryotic mitochondrial protein (predicted) Gene Length8519
Feature Typeprotein coding CDS Start3416722
Name Description CDS End3424821
Characterisation Statusconserved_unknown CDS Length8100

Ensembl Gene Location
  1. SPAC3H5.11
  2. rpl3202
  3. SPAC3H5.09c
  4. SPAC3H5.08c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC3H5.09cdelta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005739mitochondrionISOSGD:S000004446GO_REF:0000024
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
134165443425062

References

Region Start End Reference
three_prime_UTR34248223425062PMID:21511999
five_prime_UTR34165443416721PMID:21511999
three_prime_UTR34248223425062PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF10359 IPR019449 Pfam FMP27, WPPW domain 1588 2073 1
PF10344 IPR019439 Pfam FMP27, N-terminal 34 808 1
PF10305 IPR019415 Pfam FMP27, SW domain 1054 1156 1
PF10293 IPR019409 Pfam FMP27, domain of unknown function DUF2405 824 979 1
PF10347 IPR019441 Pfam FMP27, GFWDK domain 1174 1330 1
PF10351 IPR019443 Pfam FMP27, C-terminal 2088 2548 1
TMhelix TMHMM 24 46 955
Coil ncoils Rabaptin coiled-coil domain 1786 1814 974
Coil ncoils Rabaptin coiled-coil domain 2561 2582 974
Coil ncoils Rabaptin coiled-coil domain 1759 1780 974
Coil ncoils Rabaptin coiled-coil domain 304 325 974
PTHR15678 hmmpanther 22 2665 1
PTHR15678:SF6 hmmpanther 22 2665 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.54 Da
Charge 41.50
Isoelectric point 7.61
Molecular weight 311.84 kDa
Number of residues 2699
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide287.61PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.88PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.9PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated PMID:21511999
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC3H5.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3H5.09c Retrieval of eukaryotic orthologs
BioGrid SPAC3H5.09c BioGRID Interaction Datasets
Bähler Lab SPAC3H5.09c Cell Cycle Expression Profile
Bähler Lab SPAC3H5.09c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC3H5.09c Pheromone response/mating expression profiles
Bähler Lab SPAC3H5.09c Environmental stress expression profiles
Bähler Lab SPAC3H5.09c Bähler Lab Transcriptome Viewer
Cyclebase SPAC3H5.09c Cell Cycle Data
PInt SPAC3H5.09c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC3H5.09c Entrez Gene
WikiGene2543405conserved eukaryotic mitochondrial protein (predicted)
EntrezGene2543405conserved eukaryotic mitochondrial protein (predicted)
SPD / RIKEN51/51F02Orfeome Localization Data
UniProtKB/SwissProtQ6LA55UPF0648 protein C3H5.09c
ModBaseQ6LA55Database of comparative protein structure models
Pfam Protein DomainsQ6LA55Pfam Domain Arrangement
RefSeq PeptideNP_594183conserved eukaryotic mitochondrial protein (predicted)
RefSeq mRNANM_001019607972h- conserved eukaryotic mitochondrial protein (predicted) (SPAC3H5.09c), mRNA
European Nucleotide ArchiveCAB16593ENA Protein Mapping
UniParcUPI000228F36CUniProt Archive

Literature for SPAC3H5.09c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013