SPAC3H5.09c


Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPAC3H5.09c Feature Typeprotein coding
Synonyms Name Description
Productconserved eukaryotic mitochondrial protein (predicted) Product Size2699aa, 311.84 kDa
Genomic Location Chromosome I, 3416544-3425062 (8519nt); CDS:3416722-3424821 (8100nt)

Ensembl Gene Location
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0016021integral component of membraneIEAUniProtKB-KW:KW-0812GO_REF:00000371016
GO:0005739mitochondrionISOSGD:S000004446GO_REF:0000024756
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPAC3H5.09cΔNullPECO:0000005, PECO:0000137PMID:236978063755
MicroscopySPAC3H5.09cΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001510viable vegetative cell, abnormal cell shape, normal cell sizeMicroscopySPAC3H5.09cΔNullPECO:0000137, PECO:0000005PMID:23697806215
expressivity FYPO_EXT:0000003
penetrance FYPO_EXT:0000001
expressivity FYPO_EXT:0000003MicroscopySPAC3H5.09cΔNullPECO:0000137, PECO:0000004PMID:23697806
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
134165443425062

UTRs

Region Start End Reference
three_prime_UTR34248223425062PMID:21511999
five_prime_UTR34165443416721PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF10305 Pfam IPR019415 FMP27, SW domain 1054 1156 1
PF10351 Pfam IPR019443 FMP27, C-terminal 2088 2548 1
PF10347 Pfam IPR019441 FMP27, GFWDK domain 1174 1330 1
PF10293 Pfam IPR019409 FMP27, domain of unknown function DUF2405 824 979 1
PF10359 Pfam IPR019449 FMP27, WPPW domain 1588 2073 1
PF10344 Pfam IPR019439 FMP27, N-terminal 34 808 1
TMhelix TMHMM 24 46 959
PTHR15678 HMMPANTHER 22 2671 1
PTHR15678:SF6 HMMPANTHER 22 2671 1
Coil ncoils Rabaptin coiled-coil domain 304 325 975
Coil ncoils Rabaptin coiled-coil domain 1759 1780 975
Coil ncoils Rabaptin coiled-coil domain 1786 1814 975
Coil ncoils Rabaptin coiled-coil domain 2561 2582 975
Low complexity (SEG) seg 1996 2008
Low complexity (SEG) seg 2439 2451
Low complexity (SEG) seg 126 137
Low complexity (SEG) seg 286 302
Low complexity (SEG) seg 436 453
Low complexity (SEG) seg 975 989
Low complexity (SEG) seg 993 1009
Low complexity (SEG) seg 1760 1771
Low complexity (SEG) seg 1824 1835

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.54 Da
Charge 41.50
Isoelectric point 7.61
Molecular weight 311.84 kDa
Number of residues 2699
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
287.61during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
1.9during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.88during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21511999426
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3080
conserved in fungi4564
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3394
conserved in eukaryotes only2485
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPAC3H5.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3H5.09c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC3H5.09c BioGRID Interaction Datasets
Expression Viewer SPAC3H5.09c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC3H5.09c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC3H5.09c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC3H5.09c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC3H5.09c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC3H5.09c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC3H5.09c Cell Cycle Data
GEO SPAC3H5.09c GEO profiles
PInt SPAC3H5.09c Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene2543405conserved eukaryotic mitochondrial protein (predicted)
EntrezGene2543405conserved eukaryotic mitochondrial protein (predicted)
SPD / RIKEN51/51F02Orfeome Localization Data
UniProtKB/SwissProtQ6LA55UPF0648 protein C3H5.09c
ModBaseQ6LA55Database of comparative protein structure models
StringQ6LA55Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594183conserved eukaryotic mitochondrial protein (predicted)
RefSeq mRNANM_001019607972h- conserved eukaryotic mitochondrial protein (predicted) (SPAC3H5.09c), mRNA
European Nucleotide ArchiveCAB16593ENA Protein Mapping
UniParcUPI000228F36CUniProt Archive

Literature for SPAC3H5.09c

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014