rpl3202 (SPAC3H5.10)

Gene Standard Namerpl3202 ChromosomeI
Systematic IDSPAC3H5.10 Gene Start3416099
Synonymsrpl32, rpl32-2 Gene End3415408
Product60S ribosomal protein L32 (predicted) Gene Length692
Feature Typeprotein coding CDS Start3416041
Name Description CDS End3415658
Characterisation Statusbiological_role_inferred CDS Length384

Ensembl Gene Location
  1. SPAP32A8.02
  2. SPAP32A8.03c
  3. rpl501
  4. SPAC3H5.11
  5. new4
  6. rpl3202
  7. SPAC3H5.09c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyrpl3202delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003735structural constituent of ribosomeISOSGD:S000000188GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006412translationISOSGD:S000000188GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0022625cytosolic large ribosomal subunitISOSGD:S000000188GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
134160993415408

References

Region Start End Reference
three_prime_UTR34156573415408PMID:21511999
five_prime_UTR34160993416042PMID:21511999
three_prime_UTR34156573415408PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01655 IPR001515 Pfam Ribosomal protein L32e 11 119 2
PS00580 IPR018263 Prosite Patterns Ribosomal protein L32e 14 34 2
SSF52042 IPR001515 SuperFamily 4 126 2
PD003823 IPR001515 blastprodom Ribosomal protein L32e 12 118 2
PTHR23413 hmmpanther 6 127 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.84 Da
Charge 23.00
Isoelectric point 11.77
Molecular weight 14.46 kDa
Number of residues 127
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide93883.36PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide2784.67PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide76PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide6.6PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in archaea
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
lrp1leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
zfs1CCCH tandem zinc finger protein, human Tristetraprolin homolog Zfs1, involved in mRNA catabolism Two-hybridPMID:19682301
sds23PP2A-type phosphatase inhibitor Sds23/Moc1 Two-hybridPMID:19682301
Affinity Capture-Western
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
sum3translation initiation RNA helicase Sum3 Two-hybridPMID:19682301
Affinity Capture-Western
moc3transcription factor Moc3 Two-hybridPMID:19682301
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External References
Database Identifier Description
NBRP SPAC3H5.10 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3H5.10 Retrieval of eukaryotic orthologs
BioGrid SPAC3H5.10 BioGRID Interaction Datasets
Bähler Lab SPAC3H5.10 Cell Cycle Expression Profile
Bähler Lab SPAC3H5.10 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC3H5.10 Pheromone response/mating expression profiles
Bähler Lab SPAC3H5.10 Environmental stress expression profiles
Bähler Lab SPAC3H5.10 Bähler Lab Transcriptome Viewer
Cyclebase SPAC3H5.10 Cell Cycle Data
PInt SPAC3H5.10 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC3H5.10 Entrez Gene
WikiGene254346060S ribosomal protein L32
Uniprot_genenameRPL32A
EntrezGene254346060S ribosomal protein L32
SPD / RIKEN41/41B04Orfeome Localization Data
UniProtKB/SwissProtP7901560S ribosomal protein L32-A
ModBaseP79015Database of comparative protein structure models
Pfam Protein DomainsP79015Pfam Domain Arrangement
RefSeq PeptideNP_59418260S ribosomal protein L32
RefSeq mRNANM_001019606972h- 60S ribosomal protein L32 (rpl3202), mRNA
European Nucleotide ArchiveAAB63872ENA Protein Mapping
European Nucleotide ArchiveAAB63892ENA Protein Mapping
European Nucleotide ArchiveBAA19212ENA Protein Mapping
European Nucleotide ArchiveCAB16594ENA Protein Mapping
UniParcUPI0000132FB4UniProt Archive

Literature for rpl3202
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013