rpl501 (SPAC3H5.12c)

Gene Standard Namerpl501 ChromosomeI
Systematic IDSPAC3H5.12c Gene Start3410909
Synonymsrpl5, rpl5-1 Gene End3411881
Product60S ribosomal protein L5 (predicted) Gene Length973
Feature Typeprotein coding CDS Start3410951
Name Description CDS End3411835
Characterisation Statusbiological_role_inferred CDS Length885

Ensembl Gene Location
  1. apc5
  2. SPNCRNA.907
  3. SPAP32A8.02
  4. SPAP32A8.03c
  5. rpl501
  6. SPAC3H5.11
  7. new4
  8. rpl3202
  9. SPAC3H5.09c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyrpl501delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003735structural constituent of ribosomeISOSGD:S000006052GO_REF:0000024
GO:00080975S rRNA bindingIEAIPR005485GO_REF:0000002
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006412translationISOSGD:S000006052GO_REF:0000024
GO:0042254ribosome biogenesisISOSGD:S000006052GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0022625cytosolic large ribosomal subunitISOSGD:S000006052GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
134109093411881

References

Region Start End Reference
three_prime_UTR34118363411881PMID:21511999
five_prime_UTR34109093410950PMID:21511999
three_prime_UTR34118363411881PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00861 IPR005484 Pfam Ribosomal protein L18/L5 26 173 2
PF14204 IPR025607 Pfam Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal 193 287 2
G3DSA:3.30.420.100 Gene3D 12 252 2
SSF53137 SuperFamily 140 253 7
SSF53137 SuperFamily 12 112 7
PR00058 IPR005485 PRINTS Ribosomal protein L5 eukaryotic/L18 archaeal 43 62 2
PR00058 IPR005485 PRINTS Ribosomal protein L5 eukaryotic/L18 archaeal 20 39 2
PR00058 IPR005485 PRINTS Ribosomal protein L5 eukaryotic/L18 archaeal 207 227 2
PR00058 IPR005485 PRINTS Ribosomal protein L5 eukaryotic/L18 archaeal 145 164 2
PR00058 IPR005485 PRINTS Ribosomal protein L5 eukaryotic/L18 archaeal 165 184 2
PR00058 IPR005485 PRINTS Ribosomal protein L5 eukaryotic/L18 archaeal 84 104 2
PTHR23410 IPR005485 hmmpanther Ribosomal protein L5 eukaryotic/L18 archaeal 1 294 2
PTHR23410:SF8 hmmpanther 1 294 2

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:18257517

Protein Properties

Ave. residue weight 113.81 Da
Charge 8.50
Isoelectric point 9.46
Molecular weight 33.46 kDa
Number of residues 294
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide330819.6PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide56167.62PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide8.2PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide72PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
lrp1leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
zfs1CCCH tandem zinc finger protein, human Tristetraprolin homolog Zfs1, involved in mRNA catabolism Two-hybridPMID:19682301
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
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External References
Database Identifier Description
NBRP SPAC3H5.12c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC3H5.12c Retrieval of eukaryotic orthologs
BioGrid SPAC3H5.12c BioGRID Interaction Datasets
Bähler Lab SPAC3H5.12c Cell Cycle Expression Profile
Bähler Lab SPAC3H5.12c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC3H5.12c Pheromone response/mating expression profiles
Bähler Lab SPAC3H5.12c Environmental stress expression profiles
Bähler Lab SPAC3H5.12c Bähler Lab Transcriptome Viewer
Cyclebase SPAC3H5.12c Cell Cycle Data
PInt SPAC3H5.12c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC3H5.12c Entrez Gene
WikiGene254364260S ribosomal protein L5
Uniprot_genenameRPL5A
EntrezGene254364260S ribosomal protein L5
UniProtKB/SwissProtP5282260S ribosomal protein L5-A
ModBaseP52822Database of comparative protein structure models
Pfam Protein DomainsP52822Pfam Domain Arrangement
RefSeq PeptideNP_59418060S ribosomal protein L5
RefSeq mRNANM_001019604972h- 60S ribosomal protein L5 (rpl501), mRNA
European Nucleotide ArchiveAAB05674ENA Protein Mapping
European Nucleotide ArchiveCAB16596ENA Protein Mapping
UniParcUPI000013410DUniProt Archive

Literature for rpl501
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013