ppt1 (SPAC56F8.04c)

Gene Standard Nameppt1 Characterisation Statuspublished
Systematic IDSPAC56F8.04c Feature Typeprotein coding
Synonymscoq2 Name Description
Productpara-hydroxybenzoate--polyprenyltransferase Ppt1 Product Size360aa, 39.70 kDa
Genomic Location Chromosome I, 1134356-1133226 (1131nt); CDS:1134356-1133226 (1131nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
4-hydroxybenzoate decaprenyltransferase activity1
Annotation ExtensionEvidenceWith/FromReference
4-hydroxybenzoate nonaprenyltransferase activity1
Annotation ExtensionEvidenceWith/FromReference
4-hydroxybenzoate octaprenyltransferase activity1
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
isoprenoid biosynthetic process16
Annotation ExtensionEvidenceWith/FromReference
ubiquinone biosynthetic process13
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
integral component of mitochondrial inner membrane17
Annotation ExtensionEvidenceWith/FromReference
mitochondrial inner membrane164
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viability depends on conditions

Single-allele Phenotypes

Population Phenotype

Term NameGenotypesCount
abolished cell population growth on glycerol carbon sourceppt1Δ67
decreased cell population growth on glucose carbon sourceppt1Δ268
decreased vegetative cell population growthppt1Δ588
growth auxotrophic for antioxidantppt1Δ3
inviable vegetative cell populationppt1Δ1443
resistance to caffeineppt1Δ26
sensitive to bortezomibppt1Δ256
sensitive to cadmiumppt1Δ246
sensitive to copperppt1Δ10
sensitive to doxorubicinppt1Δ93
sensitive to hydrogen peroxideppt1Δ140
sensitive to salt stressppt1Δ91
slow vegetative cell population growthppt1Δ329
viable vegetative cell populationppt1Δ3815

Cell Phenotype

Term NameGenotypesCount
coenzyme Q10 absent from cellppt1Δ4
increased cellular pigment accumulation during cellular response to cadmium ion14
colour PATO:0000324ppt1Δ
increased cellular sulfide levelppt1Δ8
increased hydrogen sulfide biosynthesisppt1Δ4
inviable vegetative cellppt1Δ1288
viable vegetative cellppt1Δ3639
viable vegetative cell with normal cell morphologyppt1Δ3095
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons1134356..1134332, 1134283..1133226
CDS1134356..1134332, 1134283..1133226
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01040 Pfam IPR000537 UbiA prenyltransferase family 89 337 2
TMhelix TMHMM 281 303 959
TMhelix TMHMM 229 251 959
TMhelix TMHMM 200 222 959
PS00943 Prosite Patterns IPR030470 UbiA prenyltransferase conserved site 127 149 2
PTHR11048 HMMPANTHER 40 354 2
PTHR11048:SF7 HMMPANTHER 40 354 1
TIGR01474 tigrfam IPR006370 4-hydroxybenzoate polyprenyltransferase 65 352 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 110.27 Da
Charge 14.50
Codon Adpatation Index 0.39
Isoelectric point 9.70
Molecular weight 39.70 kDa
Number of residues 360
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2698.7during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2.7during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
0.45during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633
functionally complemented by S. cerevisiae COQ2full PMID:11092853
Disease Association
coenzyme Q deficiency3
Taxonomic Conservation
predominantly single copy (one to one)3090
conserved in fungi4604
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3421
conserved in vertebrates3396

Manually curated orthologous groups


Orthologs in Compara

Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
phenotype enhanced bydad3DASH complex subunit Dad3 Phenotypic EnhancementPMID:23365689
synthetic growth defect withdad3DASH complex subunit Dad3 Synthetic Growth DefectPMID:23365689
synthetic growth defect withdis2serine/threonine protein phosphatase PP1 subfamily, Dis2 Synthetic Growth DefectPMID:21965289
enhances phenotype ofrad55RecA family ATPase Rad55/Rhp55 Phenotypic EnhancementPMID:23365689
External References
Database Identifier Description
NBRP SPAC56F8.04c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC56F8.04c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC56F8.04c BioGRID Interaction Datasets
Expression Viewer SPAC56F8.04c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC56F8.04c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC56F8.04c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC56F8.04c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC56F8.04c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC56F8.04c Transcriptome Viewer (Bähler Lab)
GEO SPAC56F8.04c GEO profiles
PInt SPAC56F8.04c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC56F8.04c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC56F8.04c Fission yeast phenotypic data & analysis
Cyclebase SPAC56F8.04c.1 Cell Cycle Data
SPD / RIKEN16/16F05Orfeome Localization Data
IntEnz2.5.1.-Integrated relational Enzyme database
Rhea2.5.1.-Annotated reactions database
UniProtKB/SwissProtQ102524-hydroxybenzoate polyprenyltransferase, mitochondrial
ModBaseQ10252Database of comparative protein structure models
STRINGQ10252Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593219para-hydroxybenzoate--polyprenyltransferase Ppt1
RefSeq mRNANM_001018615972h- para-hydroxybenzoate--polyprenyltransferase Ppt1 (ppt1), mRNA
European Nucleotide ArchiveAB053168ENA EMBL mapping
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveDQ490018ENA EMBL mapping
European Nucleotide ArchiveABF50674ENA Protein Mapping
European Nucleotide ArchiveABF50674.1ENA Protein Mapping
European Nucleotide ArchiveBAB20425ENA Protein Mapping
European Nucleotide ArchiveBAB20425.1ENA Protein Mapping
European Nucleotide ArchiveCAA93575ENA Protein Mapping
European Nucleotide ArchiveCAA93575.2ENA Protein Mapping
UniParcUPI0001B062B3UniProt Archive

Literature for ppt1

Search: Europe PMC or PubMed

Release Version: PomBase:28_55 - 09 Sep 2015