SPAC5H10.05c


Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPAC5H10.05c Feature Typeprotein coding
Synonyms Name Description
ProductFAD binding oxidoreductase (predicted) Product Size196aa, 22.10 kDa
Genomic Location Chromosome I, 155583-153070 (2514nt); CDS:155397-154807 (591nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0050660flavin adenine dinucleotide bindingISMPFAM:PF02525GO_REF:000000128
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722316
GO:0005634nucleusIDAPMID:168233722740
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPAC5H10.05cΔNullPMID:204732893730
MicroscopySPAC5H10.05cΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001510viable vegetative cell, abnormal cell shape, normal cell size215
expressivity FYPO_EXT:0000003
penetrance FYPO_EXT:0000001
MicroscopySPAC5H10.05cΔNullPECO:0000137, PECO:0000005PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1155583153070

UTRs

Region Coordinates Reference
five_prime_UTR155583..155398PMID:21511999
three_prime_UTR154806..153070PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF02525 Pfam IPR003680 Flavodoxin-like fold 1 182 1
PTHR10204 HMMPANTHER 1 191 1
PTHR10204:SF18 HMMPANTHER 1 191 1
3.40.50.360 Gene3D IPR029039 Flavoprotein-like 1 192 7
SSF52218 SuperFamily IPR029039 Flavoprotein-like 1 192 7

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.78 Da
Charge 0.50
Isoelectric point 6.63
Molecular weight 22.10 kDa
Number of residues 196
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
21001during GO:0000080PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
21860during GO:0000084PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
17187during GO:0000085PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
18089during GO:0000087PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
20089.48during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
18391during GO:0072690PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
1.2during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
0.27during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
possible horizontal transfer17
Species Distribution
DescriptionQualifierReferenceCount
no apparent S. cerevisiae ortholog579
Orthologs

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
vps35retromer complex subunit Vps35 Negative GeneticPMID:22681890
atg6beclin family protein, involved in autophagy Negative GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
tos4FHA domain protein Tos4 (predicted) Negative GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC5H10.05c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC5H10.05c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC5H10.05c BioGRID Interaction Datasets
Expression Viewer SPAC5H10.05c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC5H10.05c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC5H10.05c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC5H10.05c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC5H10.05c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC5H10.05c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC5H10.05c Cell Cycle Data
GEO SPAC5H10.05c GEO profiles
PInt SPAC5H10.05c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC5H10.05c Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN06/06E01Orfeome Localization Data
WikiGene2542621FAD binding oxidoreductase (predicted)
EntrezGene2542621FAD binding oxidoreductase (predicted)
UniProtKB/SwissProtQ09677Uncharacterized protein C5H10.05c
ModBaseQ09677Database of comparative protein structure models
STRINGQ09677Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_592817NADPH dehydrogenase (predicted)
RefSeq PeptideNP_592818FAD binding oxidoreductase (predicted)
RefSeq mRNANM_001018217972h- NADPH dehydrogenase (predicted) (SPAC5H10.04), mRNA
RefSeq mRNANM_001018218972h- FAD binding oxidoreductase (predicted) (SPAC5H10.05c), mRNA
European Nucleotide ArchiveCAA89955ENA Protein Mapping
European Nucleotide ArchiveCAA89955.1ENA Protein Mapping
UniParcUPI0000139EFCUniProt Archive

Literature for SPAC5H10.05c

Search: Europe PMC or PubMed

Release Version: PomBase:22_45 - 08 Aug 2014