SPAC5H10.05c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC5H10.05c Gene Start155583
Synonyms Gene End153070
ProductFAD binding oxidoreductase (predicted) Gene Length2514
Feature Typeprotein coding CDS Start155397
Name Description CDS End154807
Characterisation Statusconserved_unknown CDS Length591

Ensembl Gene Location
  1. SPAC11D3.18c
  2. SPNCRNA.612
  3. SPAC5H10.01
  4. SPAC5H10.02c
  5. SPNCRNA.613
  6. SPAC5H10.03
  7. SPRRNA.10
  8. SPAC5H10.04
  9. SPAC5H10.05c
  10. adh4
  11. SPAC5H10.07
  12. pan6
  13. SPAC5H10.09c
  14. SPNCRNA.614
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC5H10.05cdelta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0050660flavin adenine dinucleotide bindingISMPFAM:PF02525GO_REF:0000001
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1155583153070

References

Region Start End Reference
three_prime_UTR154806153070PMID:21511999
five_prime_UTR155583155398PMID:21511999
three_prime_UTR154806153070PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF02525 IPR003680 Pfam Flavodoxin-like fold 1 181 1
G3DSA:3.40.50.360 Gene3D 1 192 7
SSF52218 SuperFamily 1 192 7
PTHR10204:SF3 hmmpanther 18 191 1
PTHR10204 hmmpanther 18 191 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.78 Da
Charge 0.50
Isoelectric point 6.63
Molecular weight 22.10 kDa
Number of residues 196
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide20089.48PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.2PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.27PMID:23101633
Warning
DescriptionQualifierReference
possible horizontal transfer
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
par1protein phosphatase regulatory subunit Par1 Positive GeneticPMID:22681890
atg6beclin family protein, involved in autophagy Negative GeneticPMID:22681890
SPAP14E8.02FHA domain protein Tos4 (predicted) Negative GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
vps35retromer complex subunit Vps35 Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAC5H10.05c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC5H10.05c Retrieval of eukaryotic orthologs
BioGrid SPAC5H10.05c BioGRID Interaction Datasets
Bähler Lab SPAC5H10.05c Cell Cycle Expression Profile
Bähler Lab SPAC5H10.05c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC5H10.05c Pheromone response/mating expression profiles
Bähler Lab SPAC5H10.05c Environmental stress expression profiles
Bähler Lab SPAC5H10.05c Bähler Lab Transcriptome Viewer
Cyclebase SPAC5H10.05c Cell Cycle Data
PInt SPAC5H10.05c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC5H10.05c Entrez Gene
SPD / RIKEN06/06E01Orfeome Localization Data
WikiGene2542621FAD binding oxidoreductase (predicted)
EntrezGene2542621FAD binding oxidoreductase (predicted)
UniProtKB/SwissProtQ09677Uncharacterized protein C5H10.05c
ModBaseQ09677Database of comparative protein structure models
Pfam Protein DomainsQ09677Pfam Domain Arrangement
RefSeq PeptideNP_592817NADPH dehydrogenase (predicted)
RefSeq PeptideNP_592818FAD binding oxidoreductase (predicted)
RefSeq mRNANM_001018217972h- NADPH dehydrogenase (predicted) (SPAC5H10.04), mRNA
RefSeq mRNANM_001018218972h- FAD binding oxidoreductase (predicted) (SPAC5H10.05c), mRNA
European Nucleotide ArchiveCAA89955ENA Protein Mapping
UniParcUPI0000139EFCUniProt Archive

Literature for SPAC5H10.05c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013