spo3 (SPAC607.10)

Gene Standard Namespo3 ChromosomeI
Systematic IDSPAC607.10 Gene Start2052799
Synonyms Gene End2057177
Productsporulation protein Spo3 Gene Length4379
Feature Typeprotein coding CDS Start2053945
Name Description CDS End2057031
Characterisation Statuspublished CDS Length3087

Ensembl Gene Location
  1. SPAC607.07c
  2. SPAC607.08c
  3. btn1
  4. SPNCRNA.186
  5. spo3
  6. SPNCRNA.790
  7. vma11
  8. SPAC732.02c
  9. SPAC3C7.01c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0000478normal meiosisMicroscopyspo3-B3 (unknown)unknownNot specifiedPMID:3442824
FYPO:0002060viable vegetative cell populationMicroscopyspo3delta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0030437ascospore formationIMPPMID:3442824
GO:0031321ascospore-type prospore assembly
requiredIMPPMID:11739793
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005628prospore membraneIDAPMID:11739793
GO:0005886plasma membraneIEASL-0039GO_REF:0000039
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
120527992057177

References

Region Start End Reference
three_prime_UTR20570322057177PMID:21511999
five_prime_UTR20527992053944PMID:21511999
three_prime_UTR20570322057177PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
SignalP-noTM signalp 1 19 212

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide

Protein Properties

Ave. residue weight 116.16 Da
Charge 2.50
Isoelectric point 6.75
Molecular weight 119.41 kDa
Number of residues 1028
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
expressed during sporulation
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.25PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.1PMID:23101633
Species Distribution
DescriptionQualifierReference
identified in S. pombe only
sequence orphan
no apparent orthologs
sequence orphan, characterised
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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
dma1mitotic spindle checkpoint protein Dma1 Phenotypic EnhancementPMID:20980623
psy1SNARE Psy1 Phenotypic SuppressionPMID:11739793
res1MBF transcription factor complex subunit Res1 Positive GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAC607.10 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC607.10 Retrieval of eukaryotic orthologs
BioGrid SPAC607.10 BioGRID Interaction Datasets
Bähler Lab SPAC607.10 Cell Cycle Expression Profile
Bähler Lab SPAC607.10 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC607.10 Pheromone response/mating expression profiles
Bähler Lab SPAC607.10 Environmental stress expression profiles
Bähler Lab SPAC607.10 Bähler Lab Transcriptome Viewer
Cyclebase SPAC607.10 Cell Cycle Data
PInt SPAC607.10 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC607.10 Entrez Gene
WikiGene2543520sporulation protein Spo3
Uniprot_genenameSPO3
EntrezGene2543520sporulation protein Spo3
SPD / RIKEN29/29H12Orfeome Localization Data
UniProtKB/SwissProtQ9US08Sporulation-specific protein 3
ModBaseQ9US08Database of comparative protein structure models
Pfam Protein DomainsQ9US08Pfam Domain Arrangement
RefSeq PeptideNP_593599sporulation protein Spo3
RefSeq mRNANM_001019030972h- sporulation protein Spo3 (spo3), mRNA
European Nucleotide ArchiveCAB63797ENA Protein Mapping
UniParcUPI0000135E5AUniProt Archive

Literature for spo3
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013