bdf2 (SPAC631.02)


Gene Standard Namebdf2 Characterisation Statuspublished
Systematic IDSPAC631.02 Feature Typeprotein coding
Synonymsnrc1 Name DescriptionNegative Regulator of Condensin
ProductBET family double bromodomain protein Bdf2 Product Size727aa, 81.03 kDa
Genomic Location Chromosome I, 2105472-2110519 (5048nt); CDS:2107940-2110123 (2184nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003682chromatin binding33
binds boundary_elementIDAPMID:24013502
GO:0031493nucleosomal histone bindingIDAPMID:240135024
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0006338chromatin remodelingISOSGD:S000004391GO_REF:0000024160
GO:0033696negative regulation of extent of heterochromatin assemblyIMPPMID:240135022
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0000790nuclear chromatinISMPFAM:PF00439GO_REF:0000024283
GO:0005634nucleusIDAPMID:168233722740
ISOSGD:S000004391GO_REF:0000024
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000096sensitive to cadmium246
expressivity FYPO_EXT:0000003Cell growth assaybdf2ΔNullPECO:0000102, PECO:0000005, PECO:0000137PMID:18684775
FYPO:0002060viable vegetative cell populationMicroscopybdf2ΔNullPMID:204732893759
Microscopybdf2ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001117decreased RNA level during vegetative growth111
affecting emc5Transcript expression level evidencebdf2ΔNullPMID:24013502
FYPO:0003045heterochromatin assembly beyond boundary element IRC1RReporter gene assaybdf2ΔNullPMID:240135023
FYPO:0003046heterochromatin assembly beyond boundary element IRC3LReporter gene assaybdf2ΔNullPMID:240135021
FYPO:0003047heterochromatin assembly beyond boundary element IRRReporter gene assaybdf2ΔNullPMID:240135021
FYPO:0000577increased gene silencing2
affecting emc5Transcript expression level evidencebdf2ΔNullPMID:24013502
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopybdf2ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121054722107367
221078822110519

UTRs

Region Coordinates Reference
five_prime_UTR2105472..2107367,2107882..2107939PMID:21511999
three_prime_UTR2110124..2110519PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00439 Pfam IPR001487 Bromodomain 397 481 9
PF00439 Pfam IPR001487 Bromodomain 241 318 9
SM00297 SMART IPR001487 Bromodomain 227 337 9
SM00297 SMART IPR001487 Bromodomain 390 499 9
PS51525 Prosite Profiles IPR027353 NET domain 570 650 2
PS50014 Prosite Profiles IPR001487 Bromodomain 246 318 9
PS50014 Prosite Profiles IPR001487 Bromodomain 408 480 9
PS00633 Prosite Patterns IPR018359 Bromodomain, conserved site 413 472 7
PTHR22880 HMMPANTHER 224 645 4
PTHR22880:SF49 HMMPANTHER 224 645 2
1.20.920.10 Gene3D IPR001487 Bromodomain 387 500 10
1.20.920.10 Gene3D IPR001487 Bromodomain 216 352 10
SSF47370 SuperFamily IPR001487 Bromodomain 386 505 10
SSF47370 SuperFamily IPR001487 Bromodomain 224 340 10
Coil ncoils Rabaptin coiled-coil domain 537 558 968
PR00503 PRINTS IPR001487 Bromodomain 443 461 9
PR00503 PRINTS IPR001487 Bromodomain 427 443 9
PR00503 PRINTS IPR001487 Bromodomain 249 262 9
PR00503 PRINTS IPR001487 Bromodomain 461 480 9

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000496bromodomainTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000496

Protein Properties

Ave. residue weight 111.46 Da
Charge -12.00
Isoelectric point 5.45
Molecular weight 81.03 kDa
Number of residues 727
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineexperimental evidenceS133PMID:217125471670
present during mitotic M phase
present during mitotic M phaseexperimental evidenceS667PMID:21712547
present during mitotic M phaseexperimental evidenceS135PMID:21712547
experimental evidenceS667PMID:24763107
MOD:00047O-phospho-L-threonineexperimental evidenceT669PMID:21712547692
present during mitotic M phase
MOD:00696phosphorylated residueNASPMID:195477441922
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
467during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
494during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
593during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
2421.36during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
2704.39during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
7.2during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
2.5during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Disease Association
DescriptionQualifierReferenceCount
cancercancer_census142
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21511999432
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in eukaryotes only2497
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
hrr1Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
snu66U4/U6 x U5 tri-snRNP complex subunit Snu66 Negative GeneticPMID:22681890
dim1U4/U6 x U5 tri-snRNP complex subunit Dim1 Negative GeneticPMID:22681890
mph1dual specificity protein kinase Mph1 Negative GeneticPMID:18818364
klp6kinesin-like protein Klp6 Negative GeneticPMID:18818364
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
fta6Sim4 and Mal2 associated (4 and 2 associated) protein 6 Negative GeneticPMID:22681890
elp3elongator complex subunit Elp3 (predicted) Positive GeneticPMID:22681890
mms19Dos2 silencing complex subunit Mms19 Negative GeneticPMID:18818364
ash2Ash2-trithorax family protein Negative GeneticPMID:22681890
gcn5SAGA complex histone acetyltransferase catalytic subunit Gcn5 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
dad2DASH complex subunit Dad2 Negative GeneticPMID:18818364
rap1telomere binding protein Rap1 Negative GeneticPMID:18818364
mcl1DNA polymerase alpha accessory factor Mcl1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
swc5Swr1 complex subunit Swc5 Negative GeneticPMID:18818364
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
dad3DASH complex subunit Dad3 Negative GeneticPMID:22681890
rpb9DNA-directed RNA polymerase II complex subunit Rpb9 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
swc2Swr1 complex complex subunit Swc2 Negative GeneticPMID:18818364
spc34DASH complex subunit Spc34 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
hhf1histone H4 h4.1 Phenotypic SuppressionPMID:24013502
bob1prefoldin subunit 5 (predicted) Negative GeneticPMID:18818364
prw1Clr6 histone deacetylase complex subunit Prw1 Negative GeneticPMID:22681890
pom1DYRK family protein kinase Pom1 Negative GeneticPMID:22681890
lsc1Lsk1 associated cyclin Negative GeneticPMID:22681890
prp24RNA-binding protein Prp24 (predicted) Negative GeneticPMID:22681890
dam1DASH complex subunit Dam1 Negative GeneticPMID:22681890
duo1DASH complex subunit Duo1 Negative GeneticPMID:22681890
cwf28splicing factor Cwf28 Negative GeneticPMID:22681890
ago1argonaute Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
pab2poly(A) binding protein Pab2 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
pyp1tyrosine phosphatase Pyp1 Negative GeneticPMID:22681890
usp109U1 snRNP-associated protein Usp109 Negative GeneticPMID:22681890
rxt2histone deacetylase complex subunit Rxt2 Negative GeneticPMID:22681890
dad4DASH complex subunit Dad4 Negative GeneticPMID:22681890
SPAC3A11.13prefoldin subunit 6 (predicted) Negative GeneticPMID:18818364
cph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
byr2MAP kinase kinase kinase Byr2 Negative GeneticPMID:18818364
not3CCR4-Not complex subunit Not3/5 (predicted) Negative GeneticPMID:18818364
cwf5RNA-binding protein Cwf5 Negative GeneticPMID:22681890
atp11F1-ATPase chaperone Atp11 (predicted) Positive GeneticPMID:22681890
sgf29SAGA complex subunit Sgf29 Negative GeneticPMID:18818364
cwf15complexed with Cdc5 protein Cwf15 Negative GeneticPMID:22681890
SPBC1861.07elongin C (predicted) Negative GeneticPMID:18818364
hrp3ATP-dependent DNA helicase Hrp3 Positive GeneticPMID:18818364
vrp1verprolin Negative GeneticPMID:22681890
med7mediator complex subunit Med7 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
tps1alpha,alpha-trehalose-phosphate synthase Negative GeneticPMID:22681890
set11ribosomal protein lysine methyltransferase Set11 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
elp2elongator complex subunit Elp2 (predicted) Positive GeneticPMID:18818364
Positive GeneticPMID:22681890
pac10prefoldin subunit 3 Pac10 (predicted) Negative GeneticPMID:18818364
rnc1RNA-binding protein that suppresses calcineurin deletion Rnc1 Negative GeneticPMID:18818364
bdf1Swr1 complex bromodomain subunit Brf1 Negative GeneticPMID:18818364
Synthetic LethalityPMID:22095079
Negative GeneticPMID:22681890
vps35retromer complex subunit Vps35 Negative GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
nup132nucleoporin Nup132 Negative GeneticPMID:22681890
aut12autophagy associated protein Aut12 (predicted) Negative GeneticPMID:18818364
rpa12DNA-directed RNA polymerase complex I subunit Rpa12 Negative GeneticPMID:18818364
srp1SR family protein, human SRFS2 ortholog Srp1 Negative GeneticPMID:22681890
rok1ATP-dependent RNA helicase Rok1 (predicted) Negative GeneticPMID:18818364
rad3ATR checkpoint kinase Rad3 Synthetic Growth DefectPMID:22095079
Synthetic Rescue
sty1MAP kinase Sty1 Negative GeneticPMID:22681890
spc19DASH complex subunit Spc19 Negative GeneticPMID:22681890
rox3mediator complex subunit Med19/Rox3 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
swi1replication fork protection complex subunit Swi1 Synthetic RescuePMID:22095079
crb2DNA repair protein Rad9 homolog, Rhp9 Synthetic RescuePMID:22095079
fin1serine/threonine protein kinase, NIMA related Fin1 Negative GeneticPMID:18818364
spf30splicing factor Spf30 (predicted) Negative GeneticPMID:22681890
pmc2mediator complex subunit Pmc2/Med1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
chk1Chk1 protein kinase Synthetic Growth DefectPMID:22095079
Synthetic Rescue
arp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
cwf19complexed with Cdc5 protein Cwf19 Negative GeneticPMID:22681890
ngg1SAGA complex subunit Ngg1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
rhn1RNA polymerase II transcription termination factor homolog Negative GeneticPMID:18818364
spf1Set1C PHD Finger protein Spf1 Negative GeneticPMID:18818364
mrc1mediator of replication checkpoint 1 Phenotypic SuppressionPMID:22095079
Synthetic Growth Defect
Synthetic Rescue
sap114U2 snRNP subunit Sap114 Negative GeneticPMID:22681890
vps71Swr1 complex subunit Vps71 Negative GeneticPMID:18818364
pht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
scs7sphingosine hydroxylase Scs7 Positive GeneticPMID:18818364
dad1DASH complex subunit Dad1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
hos2histone deacetylase (class I) Hos2 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
set3histone lysine methyltransferase Set3 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
swd3WD repeat protein Swd3 Negative GeneticPMID:22681890
lsk1P-TEFb-associated cyclin-dependent protein kinase Lsk1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
mpr1histidine-containing response regulator phosphotransferase Mpr1 Negative GeneticPMID:22681890
SPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:18818364
ask1DASH complex subunit Ask1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
alp16gamma tubulin complex subunit Alp16 Negative GeneticPMID:18818364
alp13MRG family Clr6 histone deacetylase complex subunit Alp13 Negative GeneticPMID:22681890
Phenotypic EnhancementPMID:19547744
swr1SNF2 family helicase Swr1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
mug154conserved fungal protein Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
msc1multi-copy suppressor of Chk1 Negative GeneticPMID:22681890
pob3FACT complex subunit Pob3 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
cds1replication checkpoint kinase Cds1 Synthetic RescuePMID:22095079
Synthetic Growth Defect
sdc1Dpy-30 domain protein Sdc1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
hif2Set3 complex subunit Hif2 Negative GeneticPMID:18818364
SPCC1919.13cribosome biogenesis protein (predicted) Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
res2MBF transcription factor complex subunit Res2 Positive GeneticPMID:18818364
Positive GeneticPMID:22681890
cph2Clr6 histone deacetylase associated PHD protein-2 Cph2 Negative GeneticPMID:22681890
SPCC18.10pyridoxine-pyridoxal-pyridoxamine kinase (predicted) Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
ura5orotate phosphoribosyltransferase Ura5 Negative GeneticPMID:18818364
ssu72phosphoric ester hydrolase Ssu72 (predicted) Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
dcr1dicer Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
SPBC36B7.08cnucleosome assembly protein (predicted) Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
vps5retromer complex subunit Vps5 Negative GeneticPMID:22681890
sir2Sir2 family histone deacetylase Sir2 Phenotypic SuppressionPMID:24013502
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
htb1histone H2B Htb1 Protein-peptidePMID:24013502
rpc37DNA-directed RNA polymerase III complex subunit Rpc37 (predicted) Affinity Capture-MSPMID:24013502
SPAC683.02ccytoplasmic mRNA processing body, zf-CCHC type zinc finger protein (predicted) Affinity Capture-MSPMID:24013502
taf11transcription factor TFIID complex subunit Taf11 (predicted) Affinity Capture-MSPMID:24013502
hta1histone H2A alpha Protein-peptidePMID:24013502
anp1mannosyltransferase complex subunit, Anp family (predicted) Affinity Capture-MSPMID:24013502
psm1mitotic cohesin complex subunit Psm1 Affinity Capture-MSPMID:24013502
SPAC27F1.06cFKBP-type peptidyl-prolyl cis-trans isomerase (predicted) Affinity Capture-MSPMID:24013502
SPAC11D3.04cSnoaL Affinity Capture-MSPMID:24013502
mms19Dos2 silencing complex subunit Mms19 Affinity Capture-MSPMID:24013502
SPAC5H10.03phosphoglycerate mutase family Affinity Capture-MSPMID:24013502
uaf2U2AF small subunit, U2AF-23 Affinity Capture-MSPMID:24013502
SPCC1223.01ubiquitin-protein ligase E3 (predicted) Affinity Capture-MSPMID:24013502
SPAC25B8.12cnucleotide-sugar phosphatase (predicted) Affinity Capture-MSPMID:24013502
snt2Lid2 complex subunit Snt2 Affinity Capture-MSPMID:24013502
hhf1histone H4 h4.1 Protein-peptidePMID:24013502
ckb1CK2 family regulatory subunit Ckb1 Affinity Capture-MSPMID:24013502
epe1Jmjc domain chromatin associated protein Epe1 Two-hybridPMID:24013502
Affinity Capture-MS
Affinity Capture-Western
taf111transcription factor TFIID complex subunit Taf111 Affinity Capture-MSPMID:24013502
snf21ATP-dependent DNA helicase Snf21 Affinity Capture-MSPMID:24013502
SPAC821.13cP-type ATPase (predicted) Affinity Capture-MSPMID:24013502
tif224translation initiation factor eIF2B delta subunit (predicted) Affinity Capture-MSPMID:24013502
ssr3SWI/SNF and RSC complex subunit Ssr3 Affinity Capture-MSPMID:24013502
taf6histone H4-like TAF Taf6, SAGA complex subunit Affinity Capture-MSPMID:24013502
spt6nucleosome remodeling protein Spt6 Affinity Capture-MSPMID:24013502
ddx27ATP-dependent RNA helicase Ddx27/Drs1 (predicted) Affinity Capture-MSPMID:24013502
brf1transcription factor TFIIIB complex subunit Brf1 Affinity Capture-MSPMID:24013502
taf9SAGA complex/ transcription initiation factor Taf9 Affinity Capture-MSPMID:24013502
rpb1RNA polymerase II large subunit Rpb1 Affinity Capture-MSPMID:24013502
hht1histone H3 h3.1 Protein-peptidePMID:24013502
pmk1MAP kinase Pmk1 Affinity Capture-MSPMID:24013502
apl4AP-1 adaptor complex gamma subunit Apl4 Affinity Capture-MSPMID:24013502
SPBC30D10.14dienelactone hydrolase family (predicted) Affinity Capture-MSPMID:24013502
cgs1cAMP-dependent protein kinase regulatory subunit Cgs1 Affinity Capture-MSPMID:24013502
rmn1RNA-binding protein Affinity Capture-MSPMID:24013502
fml2ATP-dependent 3' to 5' DNA helicase (predicted) Affinity Capture-MSPMID:24013502
SPBC1683.03cmembrane transporter (predicted) Affinity Capture-MSPMID:24013502
tma23ribosome biogenesis protein Tma23 (predicted) Affinity Capture-MSPMID:24013502
tpp2tripeptidyl-peptidase II Tpp2 Affinity Capture-MSPMID:24013502
SPCC18.05cnotchless-like protein (predicted) Affinity Capture-MSPMID:24013502
top2DNA topoisomerase II Affinity Capture-MSPMID:24013502
nap2nucleosome assembly protein Nap2 Affinity Capture-MSPMID:24013502
zhf1zinc ion transporter Zhf1 Affinity Capture-MSPMID:24013502
rer2cis-prenyltransferase Affinity Capture-MSPMID:24013502
SPAC57A7.06U3 snoRNP protein Utp14 (predicted) Affinity Capture-MSPMID:24013502
erp5COPII vesicle coat component Erp5/Erp6 (predicted) Affinity Capture-MSPMID:24013502
dhx29ATP-dependent RNA helicase, human DHX29 ortholog (predicted) Affinity Capture-MSPMID:24013502
SPCC1494.06cATP-dependent RNA helicase Dbp9 (predicted) Affinity Capture-MSPMID:24013502
dbp5cytoplasmic ATP-dependent RNA helicase Dbp5 (predicted) Affinity Capture-MSPMID:24013502
spo15sporulation protein Spo15 Affinity Capture-MSPMID:24013502
cka1serine/threonine protein kinase Cka1 Affinity Capture-MSPMID:24013502
cwf22splicing factor Cwf22 Affinity Capture-MSPMID:24013502
ubp15ubiquitin C-terminal hydrolase Ubp15 Affinity Capture-MSPMID:24013502
rnp24RNA-binding protein Rnp24 Affinity Capture-MSPMID:24013502
rpc1DNA-directed RNA polymerase III complex large subunit Rpc1 (predicted) Affinity Capture-MSPMID:24013502
taf10SAGA complex/transcription factor TFIID complex subunit Taf10 Affinity Capture-MSPMID:24013502
taf5SAGA complex subunit/TATA-binding protein associated factor/transcription factor TFIID complex subunit Taf5 Affinity Capture-MSPMID:24013502
taf4transcription factor TFIID complex subunit Taf4 (predicted) Affinity Capture-MSPMID:24013502
cnd2condensin complex non-SMC subunit Cnd2 Affinity Capture-MSPMID:24013502
kin1microtubule affinity-regulating kinase Kin1 Affinity Capture-MSPMID:24013502
rrp2ATP-dependent DNA helicase, ubiquitin-protein ligase E3 (predicted) Affinity Capture-MSPMID:24013502
arp9SWI/SNF and RSC complex subunit Arp9 Affinity Capture-MSPMID:24013502
sac11inositol polyphosphate phosphatase (predicted) Affinity Capture-MSPMID:24013502
SPCC1827.05cnucleolar RNA-binding protein NIFK (predicted) Affinity Capture-MSPMID:24013502
cho2phosphatidylethanolamine N-methyltransferase Cho2 Affinity Capture-MSPMID:24013502
rpc19DNA-directed RNA polymerase I and III subunit Rpc19 Affinity Capture-MSPMID:24013502
spt5transcription elongation factor Spt5 Affinity Capture-MSPMID:24013502
rrp9U3 snoRNP-associated protein Rrp9 (predicted) Affinity Capture-MSPMID:24013502
ubp2ubiquitin C-terminal hydrolase Ubp2 Affinity Capture-MSPMID:24013502
taf2TATA-binding protein associated factor Taf2 (predicted) Affinity Capture-MSPMID:24013502
taf73transcription factor TFIID complex subunit Taf5-like Affinity Capture-MSPMID:24013502
ptr6transcription factor TFIID complex subunit Taf7 Affinity Capture-MSPMID:24013502
mcm2MCM complex subunit Mcm2 Affinity Capture-MSPMID:24013502
SPAC11D3.02cELLA family acetyltransferase (predicted) Affinity Capture-MSPMID:24013502
bdf1Swr1 complex bromodomain subunit Brf1 Affinity Capture-MSPMID:24013502
External References
Database Identifier Description
NBRP SPAC631.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC631.02 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC631.02 BioGRID Interaction Datasets
Expression Viewer SPAC631.02 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC631.02 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC631.02 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC631.02 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC631.02 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC631.02 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC631.02 Cell Cycle Data
GEO SPAC631.02 GEO profiles
PInt SPAC631.02 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC631.02 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC631.02 Fission yeast phenotypic data & analysis
SPD / RIKEN39/39F08Orfeome Localization Data
UniProtKB/SwissProtQ9HGP4Bromodomain-containing protein C631.02
ModBaseQ9HGP4Database of comparative protein structure models
STRINGQ9HGP4Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593620bromodomain protein (predicted)
European Nucleotide ArchiveD89157ENA EMBL mapping
European Nucleotide ArchiveCAC05484.3ENA Protein Mapping
UniParcUPI00000695BEUniProt Archive

Literature for bdf2

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014