rpl13 (SPAC664.05)


Gene Standard Namerpl13 Characterisation Statusbiological_role_inferred
Systematic IDSPAC664.05 Feature Typeprotein coding
Synonyms Name Description
Product60S ribosomal protein L13 (predicted) Product Size208aa, 23.53 kDa
Genomic Location Chromosome I, 1711136-1712043 (908nt); CDS:1711214-1711840 (627nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000002240GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051445
GO:0006412translationISOSGD:S000002240GO_REF:0000024597
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722316
GO:0022625cytosolic large ribosomal subunitISOSGD:S000002240GO_REF:000002482
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyrpl13ΔNullPECO:0000005, PECO:0000137PMID:236978061331
Microscopyrpl13ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000311inviable after spore germination with normal, unseptated germ tube morphologyMicroscopyrpl13ΔNullPECO:0000005, PECO:0000137PMID:23697806237
FYPO:0002151inviable spore459
penetrance FYPO_EXT:0000001Microscopyrpl13ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
117111361712043

UTRs

Region Coordinates Reference
five_prime_UTR1711136..1711213PMID:21511999
three_prime_UTR1711841..1712043PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01294 Pfam IPR001380 Ribosomal protein L13e 9 180 1
PS01104 Prosite Patterns IPR018256 Ribosomal protein L13e, conserved site 70 84 1
PTHR11722 HMMPANTHER IPR001380 Ribosomal protein L13e 1 208 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.12 Da
Charge 25.50
Isoelectric point 11.36
Molecular weight 23.53 kDa
Number of residues 208
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineIDAS180PMID:182575171669
present during cellular response to thiabendazole
present during cellular response to thiabendazoleIDAS91PMID:18257517
present during cellular response to thiabendazoleIDAS105PMID:18257517
present during mitotic M phaseS142PMID:21712547
MOD:00696phosphorylated residueNASPMID:182575171921
NASPMID:19547744
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
379285during GO:0000080PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
341839during GO:0000084PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
347991during GO:0000085PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
353533during GO:0000087PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
210858.38during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
327213during GO:0072690PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
47419.22during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
200during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
21during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4569
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3393
conserved in archaea237
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
air1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
nxt3ubiquitin protease cofactor Glp1 (predicted) Affinity Capture-MSPMID:22328580
cwf10U5 snRNP GTPase subunit Cwf10 Affinity Capture-MSPMID:24442611
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
cka1serine/threonine protein kinase Cka1 Affinity Capture-MSPMID:23462181
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
lea1U2 snRNP-associated protein Lea1 (predicted) Affinity Capture-MSPMID:24442611
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPAC664.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC664.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC664.05 BioGRID Interaction Datasets
Expression Viewer SPAC664.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC664.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC664.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC664.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC664.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC664.05 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC664.05 Cell Cycle Data
GEO SPAC664.05 GEO profiles
PInt SPAC664.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC664.05 Peptides identified in tandem mass spectrometry proteomics experiments
WikiGene254355360S ribosomal protein L13
EntrezGene254355360S ribosomal protein L13
SPD / RIKEN07/07B05Orfeome Localization Data
UniProtKB/SwissProtO7417560S ribosomal protein L13
ModBaseO74175Database of comparative protein structure models
STRINGO74175Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59345360S ribosomal protein L13
RefSeq mRNANM_001018886972h- 60S ribosomal protein L13 (rpl13), mRNA
European Nucleotide ArchiveAB016216ENA EMBL mapping
European Nucleotide ArchiveBAA31740ENA Protein Mapping
European Nucleotide ArchiveCAB65806ENA Protein Mapping
European Nucleotide ArchiveCAB65806.1ENA Protein Mapping
ReactomeREACT_188294
ReactomeREACT_188542
ReactomeREACT_188560
ReactomeREACT_206850
ReactomeREACT_215930
UniParcUPI0000133BCAUniProt Archive

Literature for rpl13

Search: Europe PMC or PubMed

Release Version: PomBase:22_45 - 08 Aug 2014