rpl13 (SPAC664.05)


Gene Standard Namerpl13 Characterisation Statusbiological role inferred
Systematic IDSPAC664.05 Feature Typeprotein coding
Synonyms Name Description
Product60S ribosomal protein L13 (predicted) Product Size208aa, 23.53 kDa
Genomic Location Chromosome I, 1711136-1712043 (908nt); CDS:1711214-1711840 (627nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Inviable

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationrpl13Δ1451

Cell Phenotype

Term NameGenotypesCount
inviable after spore germination with normal, unseptated germ tube morphologyrpl13Δ237
inviable sporerpl13Δ476
Target Of
OntologyRelationshipGeneProduct
GO substrate of ubp15 ubiquitin C-terminal hydrolase Ubp15
GO substrate of ubp4 ubiquitin C-terminal hydrolase Ubp4
GO substrate of ubp5 ubiquitin C-terminal hydrolase Ubp5
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons1711136..1712043
mRNA1711136..1712043
5' UTR1711136..1711213PMID:21511999
CDS1711214..1711840
3' UTR1711841..1712043PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01294 Pfam IPR001380 Ribosomal protein L13e 8 180 1
PS01104 Prosite Patterns IPR018256 Ribosomal protein L13e, conserved site 70 84 1
PTHR11722 HMMPANTHER IPR001380 Ribosomal protein L13e 1 208 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.12 Da
Charge 25.50
Codon Adaptation Index 0.79
Isoelectric point 11.36
Molecular weight 23.53 kDa
Number of residues 208
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1676
present during cellular response to thiabendazoleS91
present during mitotic M phaseS142
present during cellular response to thiabendazoleS180
present during cellular response to thiabendazoleS105
Annotation ExtensionEvidenceResidueReference
present during cellular response to thiabendazole IDA S91 PMID:18257517
present during mitotic M phase experimental evidence S142 PMID:21712547
present during cellular response to thiabendazole IDA S180 PMID:18257517
present during cellular response to thiabendazole IDA S105 PMID:18257517
phosphorylated residue 1931
Annotation ExtensionEvidenceResidueReference
IDA PMID:19547744
ubiquitinylated lysineK16, K45, K59 512
Annotation ExtensionEvidenceResidueReference
mass spectrometry evidence K45 PMID:26412298
mass spectrometry evidence K59 PMID:26412298
mass spectrometry evidence K16 PMID:26412298
IDA PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rpl13 (SPAC664.05)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
379285during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
341839during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
347991during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
353533during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
327213during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
210858.38during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
47419.22during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
200during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
21during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in archaea238
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPAC664.05 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bycka1serine/threonine protein kinase Cka1 Affinity Capture-MSPMID:23462181
affinity captured bylea1U2 snRNP-associated protein Lea1 (predicted) Affinity Capture-MSPMID:24442611
affinity captured bynxt3ubiquitin protease cofactor Glp1 (predicted) Affinity Capture-MSPMID:22328580
affinity captured byair1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
affinity captured bycwf10U5 snRNP GTPase subunit Cwf10 Affinity Capture-MSPMID:24442611
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bypab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
modified bydsk1SR protein-specific kinase Dsk1 Biochemical ActivityPMID:26167880
binds activation domain construct withnap2nucleosome assembly protein Nap2 Two-hybridPMID:26771498
External References
Database Identifier Description
NBRP SPAC664.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC664.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC664.05 BioGRID Interaction Datasets
Expression Viewer SPAC664.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC664.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC664.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC664.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC664.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC664.05 Transcriptome Viewer (Bähler Lab)
GEO SPAC664.05 GEO profiles
PInt SPAC664.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC664.05 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC664.05 Fission yeast phenotypic data & analysis
Cyclebase SPAC664.05.1 Cell Cycle Data
SPD / RIKEN07/07B05Orfeome Localization Data
UniProtKB/SwissProtO7417560S ribosomal protein L13
ModBaseO74175Database of comparative protein structure models
STRINGO74175Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59345360S ribosomal protein L13
RefSeq mRNANM_001018886972h- 60S ribosomal protein L13 (rpl13), mRNA

Literature for rpl13

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016