rlp7 (SPAC664.06)

Gene Standard Namerlp7 Characterisation Statusbiological_role_inferred
Systematic IDSPAC664.06 Feature Typeprotein coding
Synonymsrpl7, rpl7-3, rpl703 Name Description
Productribosomal protein L7-like Rlp7 involved in ribosome biogenesis (predicted) Product Size249aa, 29.17 kDa
Genomic Location Chromosome I, 1712784-1713921 (1138nt); CDS:1712817-1713783 (967nt)

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0042273ribosomal large subunit biogenesisISOSGD:S000004947GO_REF:000002441
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0030687preribosome, large subunit precursorISOSGD:S000004947GO_REF:000002415
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyrlp7ΔNullPMID:204732891331
Microscopyrlp7ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002151inviable spore459
penetrance FYPO_EXT:0000001Microscopyrlp7ΔNullPECO:0000005, PECO:0000137PMID:23697806
Target Of
FYPO affected by mutation in dbr1 RNA lariat debranching enzyme Dbr1 PMID:9001235
Ensembl transcript structure with UTRs, exons and introns


Exon Start End


Region Coordinates Reference
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08079 Pfam IPR012988 Ribosomal protein L30, N-terminal 18 86 3
PF00327 Pfam IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 89 140 4
PS00634 Prosite Patterns IPR018038 Ribosomal protein L30, conserved site 108 140 3
PTHR11524 HMMPANTHER 13 249 3
3.30.1390.20 Gene3D IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 90 145 4
3.30.1390.20 Gene3D IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 209 247 4
SSF55129 SuperFamily IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 89 248 4
Coil ncoils Rabaptin coiled-coil domain 23 51 968
TIGR01310 tigrfam IPR005998 Ribosomal protein L7, eukaryotic 15 248 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.13 Da
Charge 24.50
Isoelectric point 10.76
Molecular weight 29.17 kDa
Number of residues 249
Gene Expression

Qualitative Gene Expression

RNA leveldecreased in presence of methyl methanesulfonate expression microarray evidencePMID:12529438
decreased during GO:0071470expression microarray evidencePMID:12529438
decreased during GO:0034605expression microarray evidencePMID:12529438
decreased in presence of cadmium sulfate expression microarray evidencePMID:12529438
decreased during GO:0034599expression microarray evidencePMID:12529438

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
19037during GO:0000080PECO:0000005,
mass spectrometry evidencePMID:24763107
19999during GO:0000084PECO:0000005,
mass spectrometry evidencePMID:24763107
20003during GO:0000085PECO:0000005,
mass spectrometry evidencePMID:24763107
19892during GO:0000087PECO:0000005,
mass spectrometry evidencePMID:24763107
18259during GO:0072690PECO:0000005,
mass spectrometry evidencePMID:24763107
14236.5during GO:0072690PECO:0000014,
experimental evidencePMID:23101633
5421.45during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
experimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
18during GO:0072690PECO:0000014,
experimental evidencePMID:23101633
4.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
experimental evidencePMID:23101633
ncRNA in intron16
Species Distribution
conserved in fungi4569
conserved in eukaryotes4482
conserved in bacteria1001
conserved in metazoa3419
conserved in vertebrates3393

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
External References
Database Identifier Description
NBRP SPAC664.06 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC664.06 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC664.06 BioGRID Interaction Datasets
Expression Viewer SPAC664.06 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC664.06 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC664.06 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC664.06 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC664.06 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC664.06 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC664.06 Cell Cycle Data
GEO SPAC664.06 GEO profiles
PInt SPAC664.06 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC664.06 Peptides identified in tandem mass spectrometry proteomics experiments
WikiGene254354860S ribosomal protein L7
EntrezGene254354860S ribosomal protein L7
SPD / RIKEN13/13G06Orfeome Localization Data
UniProtKB/SwissProtP1793760S ribosomal protein L7-A
ModBaseP17937Database of comparative protein structure models
STRINGP17937Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59345460S ribosomal protein L7
RefSeq mRNANM_001018887972h- 60S ribosomal protein L7 (rpl703), mRNA
European Nucleotide ArchiveCAA37639ENA Protein Mapping
European Nucleotide ArchiveCAA37639.1ENA Protein Mapping
European Nucleotide ArchiveCAB65807ENA Protein Mapping
European Nucleotide ArchiveCAB65807.1ENA Protein Mapping
UniParcUPI0000134187UniProt Archive

Literature for rlp7

Search: Europe PMC or PubMed

Release Version: PomBase:22_45 - 08 Aug 2014