rlp7 (SPAC664.06)


Gene Standard Namerlp7 Characterisation Statusbiological role inferred
Systematic IDSPAC664.06 Feature Typeprotein coding
Synonymsrpl7, rpl7-3, rpl703 Name Description
Productribosomal protein L7-like Rlp7 involved in ribosome biogenesis (predicted) Product Size249aa, 29.17 kDa
Genomic Location Chromosome I, 1712784-1713921 (1138nt); CDS:1712817-1713783 (967nt)

Ensembl Gene Location
GO Biological Process

GO Slim Terms

ribosome biogenesis


Term NameCount
ribosomal large subunit biogenesis47
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
nucleolus365
Annotation ExtensionEvidenceWith/FromReference
preribosome, large subunit precursor16
Annotation ExtensionEvidenceWith/FromReference
ribosome281
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Inviable

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationrlp7Δ1455

Cell Phenotype

Term NameGenotypesCount
inviable sporerlp7Δ476
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons1712784..1712939, 1713157..1713921
Intron1712940..1713156
mRNA1712784..1713921
5' UTR1712784..1712816PMID:21511999
CDS1712817..1712939, 1713157..1713783
3' UTR1713784..1713921PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00327 Pfam IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 90 140 4
PF08079 Pfam IPR012988 Ribosomal protein L30, N-terminal 15 85 3
PS00634 Prosite Patterns IPR018038 Ribosomal protein L30, conserved site 108 140 3
PTHR11524 HMMPANTHER 1 249 3
3.30.1390.20 Gene3D IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 209 247 4
3.30.1390.20 Gene3D IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 90 145 4
SSF55129 SuperFamily IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 89 248 4
Coil ncoils Predicted coiled-coil protein (DUF2205) 23 50 1055
TIGR01310 TIGRFAM IPR005998 Ribosomal protein L7, eukaryotic 15 248 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.13 Da
Charge 24.50
Codon Adaptation Index 0.46
Isoelectric point 10.76
Molecular weight 29.17 kDa
Number of residues 249
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA leveldecreased during GO:0071470expression microarray evidencePMID:12529438
decreased in presence of cadmium sulfate expression microarray evidencePMID:12529438
decreased during GO:0034605expression microarray evidencePMID:12529438
decreased during GO:0034599expression microarray evidencePMID:12529438
decreased in presence of methyl methanesulfonate expression microarray evidencePMID:12529438

Quantitative Gene Expression

View graphical display of gene expression data for rlp7 (SPAC664.06)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
19037during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
19999during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
20003during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
19892during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
14236.5during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
18259during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
5421.45during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
18during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
4.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
ncRNA in intron16
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4607
conserved in eukaryotes4517
conserved in bacteria1005
conserved in metazoa3427
conserved in vertebrates3402
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPAC664.06 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC664.06 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC664.06 BioGRID Interaction Datasets
Expression Viewer SPAC664.06 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC664.06 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC664.06 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC664.06 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC664.06 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC664.06 Transcriptome Viewer (Bähler Lab)
GEO SPAC664.06 GEO profiles
PInt SPAC664.06 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC664.06 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC664.06 Fission yeast phenotypic data & analysis
Cyclebase SPAC664.06.1 Cell Cycle Data
SPD / RIKEN13/13G06Orfeome Localization Data
UniProtKB/SwissProtP1793760S ribosomal protein L7-A
ModBaseP17937Database of comparative protein structure models
STRINGP17937Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593454ribosome biogenesis protein rlp7
RefSeq mRNANM_001018887972h- ribosome biogenesis protein rlp7 (rlp7), mRNA
European Nucleotide ArchiveCAA37639.1ENA Protein Mapping
European Nucleotide ArchiveCAB65807.1ENA Protein Mapping
UniParcUPI0000134187UniProt Archive

Literature for rlp7

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016