rlp7 (SPAC664.06)


Gene Standard Namerlp7 Characterisation Statusbiological_role_inferred
Systematic IDSPAC664.06 Feature Typeprotein coding
Synonymsrpl7, rpl7-3, rpl703 Name Description
Productribosomal protein L7-like Rlp7 involved in ribosome biogenesis (predicted) Product Size249aa, 29.17 kDa
Genomic Location Chromosome I, 1712784-1713921 (1138nt); CDS:1712817-1713783 (967nt)

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0042273ribosomal large subunit biogenesisISOSGD:S000004947GO_REF:000002439
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005730nucleolusIDAPMID:16823372345
ISOSGD:S000004947GO_REF:0000024
GO:0030687preribosome, large subunit precursorISOSGD:S000004947GO_REF:000002414
GO:0005840ribosomeIEAUniProtKB-KW:KW-0689GO_REF:0000037285
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyrlp7ΔNullPECO:0000005, PECO:0000137PMID:236978061309
Microscopyrlp7ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002151inviable sporeMicroscopyrlp7ΔNullPECO:0000005, PECO:0000137PMID:23697806447
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
117127841712939
217131571713921

UTRs

Region Start End Reference
five_prime_UTR17127841712816PMID:21511999
three_prime_UTR17137841713921PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08079 Pfam IPR012988 Ribosomal protein L30, N-terminal 18 86 3
PF00327 Pfam IPR016082 Ribosomal protein L30, ferredoxin-like fold domain 89 140 4
PS00634 Prosite Patterns IPR018038 Ribosomal protein L30, conserved site 108 140 3
PTHR11524 HMMPANTHER 13 249 3
G3DSA:3.30.1390.20 Gene3D IPR016082 90 145 4
G3DSA:3.30.1390.20 Gene3D IPR016082 209 247 4
SSF55129 SuperFamily IPR016082 89 248 4
Coil ncoils Rabaptin coiled-coil domain 23 51 975
Low complexity (SEG) seg 58 73
Low complexity (SEG) seg 34 45
TIGR01310 tigrfam IPR005998 Ribosomal protein L7, eukaryotic 15 248 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.13 Da
Charge 24.50
Isoelectric point 10.76
Molecular weight 29.17 kDa
Number of residues 249
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA leveldecreasedexpression microarray evidencePMID:12529438
during GO:0034599
decreased,
in presence of methyl methanesulfonate
expression microarray evidencePMID:12529438
decreasedexpression microarray evidencePMID:12529438
during GO:0071470
decreased,
in presence of cadmium sulfate
expression microarray evidencePMID:12529438
decreasedexpression microarray evidencePMID:12529438
during GO:0034605

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
5421.45during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
14236.5during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
4.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
18during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
ncRNA in intron16
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4564
conserved in eukaryotes4482
conserved in bacteria1001
conserved in metazoa3419
conserved in vertebrates3394
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
External References
Database Identifier Description
NBRP SPAC664.06 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC664.06 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC664.06 BioGRID Interaction Datasets
Expression Viewer SPAC664.06 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC664.06 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC664.06 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC664.06 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC664.06 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC664.06 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC664.06 Cell Cycle Data
GEO SPAC664.06 GEO profiles
PInt SPAC664.06 Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene254354860S ribosomal protein L7
EntrezGene254354860S ribosomal protein L7
SPD / RIKEN13/13G06Orfeome Localization Data
UniProtKB/SwissProtP1793760S ribosomal protein L7-A
ModBaseP17937Database of comparative protein structure models
StringP17937Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59345460S ribosomal protein L7
RefSeq mRNANM_001018887972h- 60S ribosomal protein L7 (rpl703), mRNA
European Nucleotide ArchiveCAA37639ENA Protein Mapping
European Nucleotide ArchiveCAB65807ENA Protein Mapping
UniParcUPI0000134187UniProt Archive

Literature for rlp7

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014