bit2 (SPAC6B12.03c)


Gene Standard Namebit2 Characterisation Statusbiological role inferred
Systematic IDSPAC6B12.03c Feature Typeprotein coding
Synonymsbit61 Name Description
ProductHbrB family protein involved in TOR signaling Bit2 (predicted) Product Size302aa, 35.50 kDa
Genomic Location Chromosome I, 2415271-2414051 (1221nt); CDS:2415137-2414229 (909nt)

Ensembl Gene Location
GO Biological Process

GO Slim Terms

signaling


Term NameCount
TOR signaling24
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
nucleus2692
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationbit2Δ3840

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell, abnormal cell shape, normal cell sizebit2Δ215
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2415271..2414051
mRNA2415271..2414051
5' UTR2415271..2415138PMID:21511999
CDS2415137..2414229
3' UTR2414228..2414051PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08539 Pfam IPR013745 HbrB-like 98 250 2
PTHR32428 HMMPANTHER 1 267 2
PTHR32428 HMMPANTHER 283 295 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.55 Da
Charge 16.50
Codon Adaptation Index 0.36
Isoelectric point 10.03
Molecular weight 35.50 kDa
Number of residues 302
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for bit2 (SPAC6B12.03c)

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0.052during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.27during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2506
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPAC6B12.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC6B12.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC6B12.03c BioGRID Interaction Datasets
Expression Viewer SPAC6B12.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC6B12.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC6B12.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC6B12.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC6B12.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC6B12.03c Transcriptome Viewer (Bähler Lab)
GEO SPAC6B12.03c GEO profiles
PInt SPAC6B12.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC6B12.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC6B12.03c Fission yeast phenotypic data & analysis
Cyclebase SPAC6B12.03c.1 Cell Cycle Data
SPD / RIKEN43/43E09Orfeome Localization Data
UniProtKB/SwissProtO14208Uncharacterized protein C6B12.03c
ModBaseO14208Database of comparative protein structure models
STRINGO14208Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593758HbrB family protein
RefSeq mRNANM_001019188972h- HbrB family protein (SPAC6B12.03c), mRNA

Literature for bit2

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016