SPAC6B12.03c


Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPAC6B12.03c Feature Typeprotein coding
Synonyms Name Description
ProductHbrB family protein Product Size302aa, 35.50 kDa
Genomic Location Chromosome I, 2415271-2414051 (1221nt); CDS:2415137-2414229 (909nt)

Ensembl Gene Location
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722317
GO:0005634nucleusIDAPMID:168233722730
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPAC6B12.03cΔNullPECO:0000005, PECO:0000137PMID:236978063755
MicroscopySPAC6B12.03cΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001510viable vegetative cell, abnormal cell shape, normal cell sizeMicroscopySPAC6B12.03cΔNullPECO:0000137, PECO:0000005PMID:23697806215
expressivity FYPO_EXT:0000003
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
124152712414051

UTRs

Region Start End Reference
five_prime_UTR24152712415138PMID:21511999
three_prime_UTR24142282414051PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08539 Pfam IPR013745 HbrB-like 93 253 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.55 Da
Charge 16.50
Isoelectric point 10.03
Molecular weight 35.50 kDa
Number of residues 302
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
NDduring GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
0.052during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.27during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4564
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3394
conserved in eukaryotes only2485
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPAC6B12.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC6B12.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC6B12.03c BioGRID Interaction Datasets
Expression Viewer SPAC6B12.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC6B12.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC6B12.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC6B12.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC6B12.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC6B12.03c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC6B12.03c Cell Cycle Data
GEO SPAC6B12.03c GEO profiles
PInt SPAC6B12.03c Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene2543232HbrB family protein
EntrezGene2543232HbrB family protein
SPD / RIKEN43/43E09Orfeome Localization Data
UniProtKB/SwissProtO14208Uncharacterized protein C6B12.03c
ModBaseO14208Database of comparative protein structure models
StringO14208Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593758HbrB family protein
RefSeq mRNANM_001019188972h- HbrB family protein (SPAC6B12.03c), mRNA
European Nucleotide ArchiveCAB11065ENA Protein Mapping
UniParcUPI000013AA30UniProt Archive

Literature for SPAC6B12.03c

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014