SPAC6B12.04c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC6B12.04c Gene Start2418241
Synonyms Gene End2415952
Productaminotransferase class I and II (predicted) Gene Length2290
Feature Typeprotein coding CDS Start2418047
Name Description CDS End2416782
Characterisation Statusbiological_role_inferred CDS Length1266

Ensembl Gene Location
  1. mus7
  2. SPAC6B12.03c
  3. SPAC6B12.04c
  4. gon7
  5. SPNCRNA.824
  6. ies2
  7. rrg9
  8. SPAC6B12.07c
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC6B12.04cdelta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0008483transaminase activityISSUniProtKB:P47039GO_REF:0000001
GO:0030170pyridoxal phosphate bindingIEAIPR004839, IPR015422, IPR015421GO_REF:0000002
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005737cytoplasmISSUniProtKB:P47039GO_REF:0000001
GO:0005739mitochondrionISSUniProtKB:P47039GO_REF:0000001
GO:0005829cytosolIDAPMID:16823372
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
124182412415952

References

Region Start End Reference
three_prime_UTR24167812415952PMID:21511999
five_prime_UTR24182412418048PMID:21511999
three_prime_UTR24167812415952PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00155 IPR004839 Pfam Aminotransferase, class I/classII 35 414 11
G3DSA:3.90.1150.10 IPR015422 Gene3D 287 416 23
G3DSA:3.40.640.10 IPR015421 Gene3D 45 286 31
SSF53383 IPR015424 SuperFamily 12 417 31
PTHR11751 hmmpanther 1 421 6
PTHR11751:SF39 hmmpanther 1 421 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.99 Da
Charge 1.00
Isoelectric point 6.78
Molecular weight 47.57 kDa
Number of residues 421
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide13553.61PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide16513.89PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2.6PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.78PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
srb11cyclin CycC, Srb mediator subunit Srb11 Positive GeneticPMID:22681890
vph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Negative GeneticPMID:22681890
atp11F1-ATPase chaperone Atp11 (predicted) Negative GeneticPMID:22681890
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
sap114U2 snRNP subunit Sap114 Positive GeneticPMID:22681890
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:22681890
SPCC162.11curidine kinase/uracil phosphoribosyltransferase (predicted) Positive GeneticPMID:22681890
SPAC1952.06cspliceosomal complex subunit (predicted) Positive GeneticPMID:22681890
ypa2protein phosphatase type 2A regulator, PTPA family Ypa2 Negative GeneticPMID:22681890
bob1prefoldin subunit 5 (predicted) Positive GeneticPMID:22681890
hus1checkpoint clamp complex protein Hus1 Negative GeneticPMID:22681890
ams2cell cycle regulated GATA-type transcription factor Ams2 Positive GeneticPMID:22681890
slx4structure-specific endonuclease subunit Slx4 Positive GeneticPMID:22681890
Contact Curators
External References
Database Identifier Description
NBRP SPAC6B12.04c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC6B12.04c Retrieval of eukaryotic orthologs
BioGrid SPAC6B12.04c BioGRID Interaction Datasets
Bähler Lab SPAC6B12.04c Cell Cycle Expression Profile
Bähler Lab SPAC6B12.04c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC6B12.04c Pheromone response/mating expression profiles
Bähler Lab SPAC6B12.04c Environmental stress expression profiles
Bähler Lab SPAC6B12.04c Bähler Lab Transcriptome Viewer
Cyclebase SPAC6B12.04c Cell Cycle Data
PInt SPAC6B12.04c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC6B12.04c Entrez Gene
IntEnz2.6.1.-
WikiGene2543228aminotransferase class I and II
EntrezGene2543228aminotransferase class I and II
SPD / RIKEN20/20C04Orfeome Localization Data
UniProtKB/SwissProtO14209Uncharacterized aminotransferase C6B12.04c
ModBaseO14209Database of comparative protein structure models
Pfam Protein DomainsO14209Pfam Domain Arrangement
RefSeq PeptideNP_593759aminotransferase class I and II
RefSeq mRNANM_001019189972h- aminotransferase class I and II (SPAC6B12.04c), mRNA
RefSeq_mRNA_predictedXM_001713014972h- dubious (SPAC6B12.18), mRNA
RefSeq_peptide_predictedXP_001713066dubious
European Nucleotide ArchiveCAB11066ENA Protein Mapping
UniParcUPI000013AA31UniProt Archive

Literature for SPAC6B12.04c
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013