cid13 (SPAC821.04c)

Gene Standard Namecid13 ChromosomeI
Systematic IDSPAC821.04c Gene Start987084
Synonyms Gene End983567
Productpoly(A) polymerase Cid13 Gene Length3518
Feature Typeprotein coding CDS Start986747
Name Description CDS End985011
Characterisation Statuspublished CDS Length1737

Ensembl Gene Location
  1. meu13
  2. SPAC222.18
  3. csn3
  4. SPAC821.03c
  5. cid13
  6. snu3
  7. SPAC821.05
  8. SPNCRNA.702
  9. spn2
  10. moc3
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopycid13delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003730mRNA 3'-UTR bindingICGO:0004652GO_REF:0000001
GO:0004652polynucleotide adenylyltransferase activity
has_direct_input SPBC25D12.04-1IDAPMID:12062100
GO:0005524ATP bindingIEAUniProtKB:KW-0067GO_REF:0000037
GO:0046872metal ion bindingIEAUniProtKB:KW-0479GO_REF:0000037
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006378mRNA polyadenylationIDAPMID:12062100
GO:0033314mitotic DNA replication checkpointIMPPMID:12218190
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005737cytoplasmIDAPMID:12062100
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1987084983567

References

Region Start End Reference
three_prime_UTR985010983567PMID:21511999
three_prime_UTR985010983567PMID:21511999
five_prime_UTR987084986748PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01909 IPR002934 Pfam Nucleotidyl transferase domain 77 164 6
PF03828 IPR002058 Pfam PAP/25A-associated 275 330 6
G3DSA:3.30.460.10 Gene3D 70 211 11
SSF81631 SuperFamily 187 367 7
SSF81301 SuperFamily 50 183 11
PTHR12271 hmmpanther 48 550 4
PTHR12271:SF14 hmmpanther 48 550 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.79 Da
Charge -4.00
Isoelectric point 6.03
Molecular weight 65.77 kDa
Number of residues 578
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.1PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2.2PMID:23101633
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
conserved in fungi
conserved in eukaryotes
conserved in eukaryotes only
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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
cdc2cyclin-dependent protein kinase Cdk1/Cdc2 Dosage RescuePMID:12062100
rad26ATRIP, ATR checkpoint kinase regulatory subunit Rad26 Dosage RescuePMID:12062100
cds1replication checkpoint kinase Cds1 Dosage RescuePMID:12062100
Synthetic Growth Defect
rad1checkpoint clamp complex protein Rad1 Dosage RescuePMID:12062100
rad3ATR checkpoint kinase Rad3 Dosage RescuePMID:12062100
Synthetic Growth Defect
Synthetic RescuePMID:12218190
mog1Ran GTPase binding protein Mog1 Synthetic RescuePMID:17651922
rad9checkpoint clamp complex protein Rad9 Dosage RescuePMID:12062100
rad17RFC related checkpoint protein Rad17 Dosage RescuePMID:12062100
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
pabpmRNA export shuttling protein Affinity Capture-WesternPMID:12062100
rad2414-3-3 protein Rad24 Affinity Capture-MSPMID:12062100
hsp90Hsp90 chaperone Affinity Capture-MSPMID:12062100
rad2514-3-3 protein Rad25 Affinity Capture-MSPMID:12062100
SPAC9G1.05actin cortical patch component Aip1 (predicted) Affinity Capture-MSPMID:12062100
mog1Ran GTPase binding protein Mog1 Affinity Capture-WesternPMID:17651922
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External References
Database Identifier Description
NBRP SPAC821.04c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC821.04c Retrieval of eukaryotic orthologs
BioGrid SPAC821.04c BioGRID Interaction Datasets
Bähler Lab SPAC821.04c Cell Cycle Expression Profile
Bähler Lab SPAC821.04c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC821.04c Pheromone response/mating expression profiles
Bähler Lab SPAC821.04c Environmental stress expression profiles
Bähler Lab SPAC821.04c Bähler Lab Transcriptome Viewer
Cyclebase SPAC821.04c Cell Cycle Data
PInt SPAC821.04c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC821.04c Entrez Gene
IntEnz2.7.7.19
WikiGene2543204poly(A) polymerase Cid13
Uniprot_genenameCID13
EntrezGene2543204poly(A) polymerase Cid13
SPD / RIKEN45/45F11Orfeome Localization Data
UniProtKB/SwissProtQ9UT49Poly(A) RNA polymerase cid13
ModBaseQ9UT49Database of comparative protein structure models
Pfam Protein DomainsQ9UT49Pfam Domain Arrangement
RefSeq PeptideNP_593157poly(A) polymerase Cid13
RefSeq mRNANM_001018555972h- poly(A) polymerase Cid13 (cid13), mRNA
European Nucleotide ArchiveCAB57438ENA Protein Mapping
UniParcUPI000012799AUniProt Archive

Literature for cid13
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013