SPAC8F11.04

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC8F11.04 Gene Start2859388
Synonyms Gene End2861935
ProductU3 snoRNP-associated protein Cic1/Utp30 family (predicted) Gene Length2548
Feature Typeprotein coding CDS Start2859456
Name Description CDS End2860704
Characterisation Statusbiological_role_inferred CDS Length1249

Ensembl Gene Location
  1. SPAC3F10.17
  2. rpl4102
  3. dph3
  4. msh3
  5. SPNCRNA.856
  6. SPAC8F11.04
  7. mug130
  8. brr6
  9. cdc24
  10. SPAC8F11.08c
  11. nnt1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001489inviable vegetative cellMicroscopySPAC8F11.04delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingIEAIPR002143, IPR023674GO_REF:0000002
GO:0003735structural constituent of ribosomeIEAIPR002143, IPR023674, IPR016095GO_REF:0000002
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006412translationIEAIPR002143GO_REF:0000002
GO:0030490maturation of SSU-rRNAISOSGD:S000001768GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusISOSGD:S000001768GO_REF:0000024
GO:0005730nucleolusIDAPMID:16823372
ISOSGD:S000001768GO_REF:0000024
GO:0015934large ribosomal subunitIEAIPR002143, IPR023674GO_REF:0000002
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
128593882859491
228596192860878
328609202861935

References

Region Start End Reference
three_prime_UTR28609202861935PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00687 IPR002143 Pfam Ribosomal protein L1 19 248 5
G3DSA:3.40.50.790 IPR016095 Gene3D 110 177 4
SSF56808 IPR023674 SuperFamily 41 252 5
PTHR23105:SF3 hmmpanther 70 291 1
PTHR23105 hmmpanther 70 291 9

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:18257517

Protein Properties

Ave. residue weight 110.88 Da
Charge 30.00
Isoelectric point 10.46
Molecular weight 41.36 kDa
Number of residues 373
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide9696.87PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide5186.73PMID:23101633
RNA levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide5.1PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.64PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
clp1Cdc14-related protein phosphatase Clp1/Flp1 Affinity Capture-MSPMID:23297348
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:21436456
mlo3RNA binding protein Mlo3 Affinity Capture-MSPMID:21436456
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External References
Database Identifier Description
NBRP SPAC8F11.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC8F11.04 Retrieval of eukaryotic orthologs
BioGrid SPAC8F11.04 BioGRID Interaction Datasets
Bähler Lab SPAC8F11.04 Cell Cycle Expression Profile
Bähler Lab SPAC8F11.04 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC8F11.04 Pheromone response/mating expression profiles
Bähler Lab SPAC8F11.04 Environmental stress expression profiles
Bähler Lab SPAC8F11.04 Bähler Lab Transcriptome Viewer
Cyclebase SPAC8F11.04 Cell Cycle Data
PInt SPAC8F11.04 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC8F11.04 Entrez Gene
SPD / RIKEN19/19H12Orfeome Localization Data
WikiGene2543438U3 snoRNP-associated protein Cic1/Utp30 family (predicted)
EntrezGene2543438U3 snoRNP-associated protein Cic1/Utp30 family (predicted)
UniProtKB/SwissProtQ9UT32Putative ribosome biogenesis protein C8F11.04
ModBaseQ9UT32Database of comparative protein structure models
Pfam Protein DomainsQ9UT32Pfam Domain Arrangement
RefSeq PeptideNP_593953U3 snoRNP-associated protein Cic1/Utp30 family (predicted)
RefSeq mRNANM_001019380972h- U3 snoRNP-associated protein Cic1/Utp30 family (predicted) (SPAC8F11.04), mRNA
European Nucleotide ArchiveCAB52165ENA Protein Mapping
SPD / RIKEN19/19H12Orfeome Localization Data

Literature for SPAC8F11.04
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013