atd2 (SPAC922.07c)


Gene Standard Nameatd2 Characterisation Statusbiological_role_inferred
Systematic IDSPAC922.07c Feature Typeprotein coding
Synonyms Name DescriptionAceTaldehyde Dehydrogenase
Productaldehyde dehydrogenase (predicted) Product Size496aa, 54.03 kDa
Genomic Location Chromosome I, 5488830-5486848 (1983nt); CDS:5488606-5487116 (1491nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
3-chloroallyl aldehyde dehydrogenase activity1
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
beta-alanine biosynthetic process1
Annotation ExtensionEvidenceWith/FromReference
cellular aldehyde metabolic process17
Annotation ExtensionEvidenceWith/FromReference
polyamine catabolic process2
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytoplasm4205
Annotation ExtensionEvidenceWith/FromReference
cytosol2315
Annotation ExtensionEvidenceWith/FromReference
nucleus2740
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyatd2ΔNullPECO:0000005, PECO:0000137PMID:236978063759
Microscopyatd2ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyatd2ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
154888305486848

UTRs

Region Coordinates Reference
five_prime_UTR5488830..5488607PMID:21511999
three_prime_UTR5487115..5486848PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00171 Pfam IPR015590 Aldehyde dehydrogenase domain 29 488 8
PS00687 Prosite Patterns IPR016160 Aldehyde dehydrogenase, conserved site 262 269 7
PTHR11699 HMMPANTHER 7 496 7
PTHR11699:SF46 HMMPANTHER 7 496 2
3.40.309.10 Gene3D IPR016163 Aldehyde dehydrogenase, C-terminal 276 463 8
3.40.605.10 Gene3D IPR016162 Aldehyde dehydrogenase, N-terminal 19 275 8
SSF53720 SuperFamily IPR016161 Aldehyde/histidinol dehydrogenase 14 493 9

View domain organization at Pfam

Protein Properties

Ave. residue weight 108.93 Da
Charge -6.00
Isoelectric point 5.26
Molecular weight 54.03 kDa
Number of residues 496
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
11236during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
12062during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
10850during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
11702during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
11686during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
4261.4during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
23282.52during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2.2during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
2.7during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3425
conserved in vertebrates3400
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
cbf11CBF1/Su(H)/LAG-1 family transcription factor Cbf11 Affinity Capture-MSPMID:22540037
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
SPAC1A6.03cphospholipase (predicted) Positive GeneticPMID:22681890
sre2membrane-tethered transcription factor Sre2 Negative GeneticPMID:21504829
res2MBF transcription factor complex subunit Res2 Negative GeneticPMID:22681890
swd1Set1C complex subunit Swd1 Positive GeneticPMID:22681890
dad1DASH complex subunit Dad1 Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC922.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC922.07c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC922.07c BioGRID Interaction Datasets
Expression Viewer SPAC922.07c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC922.07c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC922.07c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC922.07c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC922.07c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC922.07c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC922.07c Cell Cycle Data
GEO SPAC922.07c GEO profiles
PInt SPAC922.07c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC922.07c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC922.07c Fission yeast phenotypic data & analysis
IntEnz1.2.1.5Integrated relational Enzyme database
Rhea1.2.1.5Annotated reactions database
SPD / RIKEN24/24A10Orfeome Localization Data
UniProtKB/SwissProtQ9URW9Putative aldehyde dehydrogenase-like protein C922.07c
ModBaseQ9URW9Database of comparative protein structure models
STRINGQ9URW9Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595007aldehyde dehydrogenase (predicted)
RefSeq mRNANM_001020438972h- aldehyde dehydrogenase (predicted) (SPAC922.07c), mRNA
European Nucleotide ArchiveCAB63554.1ENA Protein Mapping
UniParcUPI000006B5C3UniProt Archive

Literature for atd2

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014