SPAC9E9.06c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC9E9.06c Gene Start4447549
Synonyms Gene End4445573
Productthreonine synthase (predicted) Gene Length1977
Feature Typeprotein coding CDS Start4447468
Name Description CDS End4445866
Characterisation Statusbiological_role_inferred CDS Length1603

Ensembl Gene Location
  1. prl12
  2. leu2
  3. SPNCRNA.988
  4. SPAC9E9.04
  5. SPAC9E9.05
  6. SPAC9E9.06c
  7. ypt2
  8. rad26
  9. SPAC9E9.09c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPAC9E9.06cdelta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0004795threonine synthase activityISOSGD:S000000649GO_REF:0000024
GO:0030170pyridoxal phosphate bindingIEAIPR000634GO_REF:0000002
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0009088threonine biosynthetic processISSUniProtKB:P16120GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusISOSGD:S000000649GO_REF:0000024
IDAPMID:16823372
GO:0005737cytoplasmISOSGD:S000000649GO_REF:0000024
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
144475494447400
244473414445573

References

Region Start End Reference
three_prime_UTR44458654445573PMID:21511999
three_prime_UTR44458654445573PMID:21511999
five_prime_UTR44475494447469PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00291 IPR001926 Pfam Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily 93 442 7
PS00165 IPR000634 Prosite Patterns Serine/threonine dehydratase, pyridoxal-phosphate-binding site 107 121 2
G3DSA:3.40.50.1100 Gene3D 145 214 7
G3DSA:3.40.50.1100 Gene3D 215 471 7
G3DSA:3.90.1380.10 Gene3D 6 90 1
SSF53686 IPR001926 SuperFamily 5 506 7
PTHR10314:SF1 hmmpanther 6 465 1
PTHR10314 hmmpanther 6 465 7
TIGR00260 IPR004450 tigrfam Threonine synthase-like 73 468 1

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:19547744

Protein Properties

Ave. residue weight 112.13 Da
Charge -8.00
Isoelectric point 5.27
Molecular weight 57.63 kDa
Number of residues 514
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide74450.87PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide18200.66PMID:23101633
RNA levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide19PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide2.1PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC9E9.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC9E9.06c Retrieval of eukaryotic orthologs
BioGrid SPAC9E9.06c BioGRID Interaction Datasets
Bähler Lab SPAC9E9.06c Cell Cycle Expression Profile
Bähler Lab SPAC9E9.06c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC9E9.06c Pheromone response/mating expression profiles
Bähler Lab SPAC9E9.06c Environmental stress expression profiles
Bähler Lab SPAC9E9.06c Bähler Lab Transcriptome Viewer
Cyclebase SPAC9E9.06c Cell Cycle Data
PInt SPAC9E9.06c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC9E9.06c Entrez Gene
WikiGene2542653threonine synthase (predicted)
Uniprot_genenameTHRC
EntrezGene2542653threonine synthase (predicted)
KEGGMAP00750
KEGGMAP00260
IntEnz4.2.3.1
UniProtKB/SwissProtQ42598Threonine synthase
ModBaseQ42598Database of comparative protein structure models
Pfam Protein DomainsQ42598Pfam Domain Arrangement
RefSeq PeptideNP_594579threonine synthase (predicted)
RefSeq mRNANM_001020008972h- threonine synthase (predicted) (SPAC9E9.06c), mRNA
European Nucleotide ArchiveBAA13852ENA Protein Mapping
European Nucleotide ArchiveCAA86405ENA Protein Mapping
European Nucleotide ArchiveCAB16415ENA Protein Mapping
SPD / RIKEN25/25G02Orfeome Localization Data
UniParcUPI0000136EDCUniProt Archive

Literature for SPAC9E9.06c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013