SPAPB21F2.02

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAPB21F2.02 Gene Start492335
Synonyms Gene End497927
ProductDopey family protein (predicted) Gene Length5593
Feature Typeprotein coding CDS Start492461
Name Description CDS End497689
Characterisation Statusbiological_role_inferred CDS Length5229

Ensembl Gene Location
  1. cul3
  2. SPAC24H6.02c
  3. SPNCRNA.654
  4. SPAC24H6.01c
  5. prl47
  6. SPAPB21F2.02
  7. slx9
  8. erd1
  9. SPAC227.19c
  10. SPNCRNA.655
  11. SPAC227.02c
  12. SPAC227.03c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAPB21F2.02delta (deletion)deletionPMID:20473289
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006895Golgi to endosome transportISOSGD:S000002548GO_REF:0000024
GO:0007029endoplasmic reticulum organizationISOSGD:S000002548GO_REF:0000024
GO:0008360regulation of cell shapeISOSGD:S000002548GO_REF:0000024
GO:0015031protein transportIEAUniProtKB:KW-0653GO_REF:0000037
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0000139Golgi membraneIEASL-0134GO_REF:0000039
GO:0005737cytoplasmISOSGD:S000002548GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1492335492476
2492512492630
3492673494385
4494423494615
5494667497927

References

Region Start End Reference
three_prime_UTR497690497927PMID:21511999
five_prime_UTR492335492460PMID:21511999
three_prime_UTR497690497927PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF04118 IPR007249 Pfam Dopey, N-terminal 9 306 1
PTHR14042 hmmpanther 1 1671 1
PTHR14042:SF7 hmmpanther 1 1671 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.20 Da
Charge -12.50
Isoelectric point 5.85
Molecular weight 192.65 kDa
Number of residues 1687
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide3825.26PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2782.49PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.67PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ypa1protein phosphatase type 2A regulator, PTPA family Ypa1 Negative GeneticPMID:22681890
elp3elongator complex, histone acetyltransferase subunit Elp3 (predicted) Positive GeneticPMID:22681890
SPBC26H8.05cserine/threonine protein phosphatase (predicted) Negative GeneticPMID:22681890
swc5Swr1 complex subunit Swc5 Positive GeneticPMID:22681890
hrp3ATP-dependent DNA helicase Hrp3 Positive GeneticPMID:22681890
prp4serine/threonine protein kinase Prp4 Negative GeneticPMID:22681890
elp2elongator complex subunit Elp2 (predicted) Positive GeneticPMID:22681890
vps5retromer complex subunit Vps5 Negative GeneticPMID:22681890
ago1argonaute Negative GeneticPMID:22681890
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:22681890
SPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:22681890
ase1antiparallel microtubule cross-linking factor Ase1 Positive GeneticPMID:22681890
clr1cryptic loci regulator Clr1 Negative GeneticPMID:22681890
amk2AMP-activated protein kinase beta subunit Amk2 Negative GeneticPMID:22681890
dsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:21504829
gcn5SAGA complex histone acetyltransferase catalytic subunit Gcn5 Negative GeneticPMID:22681890
SPBC4B4.04translation initiation factor eIF2A (predicted) Negative GeneticPMID:22681890
ngg1SAGA complex subunit Ngg1 Negative GeneticPMID:22681890
ptc1protein phosphatase 2C Ptc1 Negative GeneticPMID:22681890
SPBC29A3.09cAAA family ATPase Gcn20 (predicted) Positive GeneticPMID:22681890
cdm1DNA polymerase delta subunit Cdm1 Positive GeneticPMID:22681890
syj1inositol-polyphosphate 5-phosphatase (synaptojanin homolog 1) Negative GeneticPMID:22681890
dsk1SR protein-specific kinase Dsk1 Positive GeneticPMID:22681890
dsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
dmc1RecA family ATPase Dmc1 Negative GeneticPMID:22681890
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Negative GeneticPMID:21504829
Negative GeneticPMID:22681890
alp31tubulin specific chaperone cofactor A, Alp31 Positive GeneticPMID:22681890
srp1SR family protein, human SRFS2 ortholog Srp1 Negative GeneticPMID:22681890
dsc4Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
Negative GeneticPMID:22681890
gma12alpha-1,2-galactosyltransferase Gma12 Negative GeneticPMID:22681890
ssu72phosphoric ester hydrolase Ssu72 (predicted) Negative GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Negative GeneticPMID:22681890
ies2Ino80 complex subunit Ies2 Positive GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAPB21F2.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAPB21F2.02 Retrieval of eukaryotic orthologs
BioGrid SPAPB21F2.02 BioGRID Interaction Datasets
Bähler Lab SPAPB21F2.02 Cell Cycle Expression Profile
Bähler Lab SPAPB21F2.02 Meiosis/Sporulation Expression Profies
Bähler Lab SPAPB21F2.02 Pheromone response/mating expression profiles
Bähler Lab SPAPB21F2.02 Environmental stress expression profiles
Bähler Lab SPAPB21F2.02 Bähler Lab Transcriptome Viewer
Cyclebase SPAPB21F2.02 Cell Cycle Data
PInt SPAPB21F2.02 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAPB21F2.02 Entrez Gene
WikiGene2543220Dopey family protein
EntrezGene2543220Dopey family protein
UniProtKB/SwissProtQ9C0Z4Protein dopey
ModBaseQ9C0Z4Database of comparative protein structure models
Pfam Protein DomainsQ9C0Z4Pfam Domain Arrangement
RefSeq PeptideNP_592953Dopey family protein
RefSeq mRNANM_001018353972h- Dopey family protein (SPAPB21F2.02), mRNA
European Nucleotide ArchiveCAC36891ENA Protein Mapping
UniParcUPI000006B59FUniProt Archive

Literature for SPAPB21F2.02
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013