rps002 (SPAPJ698.02c)


Gene Standard Namerps002 Characterisation Statuspublished
Systematic IDSPAPJ698.02c Feature Typeprotein coding
Synonymsrps0, rps0-2, rpsa-2 Name Description
Product40S ribosomal protein S0B Product Size287aa, 31.42 kDa
Genomic Location Chromosome I, 4037624-4036533 (1092nt); CDS:4037586-4036723 (864nt)

Ensembl Gene Location
  1. mak2
  2. rfc3
  3. rps002
  4. prp12
  5. cut20
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005515protein bindingIPIrps21PMID:14623272865
GO:0003735structural constituent of ribosomeIEAHAMAP:MF_03015GO_REF:0000020255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051446
GO:0000028ribosomal small subunit assemblyIEAHAMAP:MF_03015GO_REF:00000205
GO:0042274ribosomal small subunit biogenesisIMPPMID:1462327254
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722319
GO:0022627cytosolic small ribosomal subunitIEAHAMAP:MF_03015GO_REF:000002064
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrps002ΔNullPECO:0000005, PECO:0000137PMID:236978063751
Microscopyrps002ΔNullPMID:20473289
Microscopynot recorded (unrecorded)PMID:14623272

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001Microscopyrps002ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
140376244036533
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00318 Pfam IPR001865 Ribosomal protein S2 21 117 3
PF00318 Pfam IPR001865 Ribosomal protein S2 120 187 3
PS00963 Prosite Patterns IPR018130 Ribosomal protein S2, conserved site 122 146 2
PTHR11489 HMMPANTHER IPR005707 Ribosomal protein S2, eukaryotic/archaeal 6 286 2
3.40.50.10490 Gene3D 35 218 5
SSF52313 SuperFamily IPR023591 Ribosomal protein S2, flavodoxin-like domain 15 203 3
Coil ncoils Rabaptin coiled-coil domain 213 234 968
PR00395 PRINTS IPR001865 Ribosomal protein S2 48 57 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 139 150 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 18 36 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 122 139 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 160 174 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 97 114 3
TIGR01012 tigrfam IPR005707 Ribosomal protein S2, eukaryotic/archaeal 16 208 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.48 Da
Charge -9.50
Isoelectric point 4.70
Molecular weight 31.42 kDa
Number of residues 287
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineIDAS46PMID:182575171670
present during cellular response to thiabendazole
present during mitotic M phaseS46PMID:21712547
present during cellular response to thiabendazoleIDAT107PMID:18257517
MOD:00696phosphorylated residueNASPMID:182575171922
NASPMID:19547744
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
664270during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
655292during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
670801during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
631216during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
627915during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
247523.34during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
55243.82during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
120during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
10during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4599
conserved in eukaryotes4514
conserved in bacteria1002
conserved in metazoa3428
conserved in vertebrates3402
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
rps2140S ribosomal protein S21 Affinity Capture-WesternPMID:14623272
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
paa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:24634168
External References
Database Identifier Description
NBRP SPAPJ698.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAPJ698.02c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAPJ698.02c BioGRID Interaction Datasets
Expression Viewer SPAPJ698.02c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAPJ698.02c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAPJ698.02c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAPJ698.02c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAPJ698.02c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAPJ698.02c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAPJ698.02c Cell Cycle Data
GEO SPAPJ698.02c GEO profiles
PInt SPAPJ698.02c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAPJ698.02c Peptides identified in tandem mass spectrometry proteomics experiments
UniProtKB/SwissProtQ9P54640S ribosomal protein S0-B
ModBaseQ9P546Database of comparative protein structure models
STRINGQ9P546Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59441340S ribosomal protein S0B
RefSeq mRNANM_001019843972h- 40S ribosomal protein S0B (rps002), mRNA
European Nucleotide ArchiveCAB92099.1ENA Protein Mapping
UniParcUPI0000134B8FUniProt Archive

Literature for rps002

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014