rps002 (SPAPJ698.02c)

Gene Standard Namerps002 Characterisation Statuspublished
Systematic IDSPAPJ698.02c Feature Typeprotein coding
Synonymsrps0, rps0-2, rpsa-2 Name Description
Product40S ribosomal protein S0B Product Size287aa, 31.42 kDa
Genomic Location Chromosome I, 4037624-4036533 (1092nt); CDS:4037586-4036723 (864nt)

Ensembl Gene Location
  1. mak2
  2. rfc3
  3. rps002
  4. prp12
  5. cut20
GO Molecular Function
Term NameCount
protein binding831
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation473
Annotation ExtensionEvidenceWith/FromReference
ribosomal small subunit assembly5
Annotation ExtensionEvidenceWith/FromReference
ribosomal small subunit biogenesis54
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit65
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrps002ΔNullPECO:0000005, PECO:0000137PMID:236978063759
Microscopynot recorded (unrecorded)PMID:14623272

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrps002ΔNullPECO:0000005, PECO:0000137PMID:23697806
Ensembl transcript structure with UTRs, exons and introns


Exon Start End


Region Coordinates Reference
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00318 Pfam IPR001865 Ribosomal protein S2 21 117 3
PF00318 Pfam IPR001865 Ribosomal protein S2 120 187 3
PS00963 Prosite Patterns IPR018130 Ribosomal protein S2, conserved site 122 146 2
PTHR11489 HMMPANTHER IPR005707 Ribosomal protein S2, eukaryotic/archaeal 6 286 2 Gene3D 35 218 5
SSF52313 SuperFamily IPR023591 Ribosomal protein S2, flavodoxin-like domain 15 203 3
Coil ncoils Rabaptin coiled-coil domain 213 234 968
PR00395 PRINTS IPR001865 Ribosomal protein S2 48 57 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 139 150 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 18 36 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 122 139 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 160 174 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 97 114 3
TIGR01012 tigrfam IPR005707 Ribosomal protein S2, eukaryotic/archaeal 16 208 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.48 Da
Charge -9.50
Isoelectric point 4.70
Molecular weight 31.42 kDa
Number of residues 287

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineexperimental evidenceS46PMID:217125471670
present during mitotic M phase
present during cellular response to thiabendazoleIDAT107PMID:18257517
present during cellular response to thiabendazoleIDAS46PMID:18257517
MOD:00696phosphorylated residueNASPMID:182575171922
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
664270during GO:0000080PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
655292during GO:0000084PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
670801during GO:0000085PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
631216during GO:0000087PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
627915during GO:0072690PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
247523.34during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
55243.82during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
120during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
10during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633
Species Distribution
conserved in fungi4600
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3425
conserved in vertebrates3400

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
rps2140S ribosomal protein S21 Affinity Capture-WesternPMID:14623272
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
paa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:24634168
External References
Database Identifier Description
NBRP SPAPJ698.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAPJ698.02c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAPJ698.02c BioGRID Interaction Datasets
Expression Viewer SPAPJ698.02c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAPJ698.02c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAPJ698.02c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAPJ698.02c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAPJ698.02c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAPJ698.02c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAPJ698.02c Cell Cycle Data
GEO SPAPJ698.02c GEO profiles
PInt SPAPJ698.02c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAPJ698.02c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAPJ698.02c Fission yeast phenotypic data & analysis
UniProtKB/SwissProtQ9P54640S ribosomal protein S0-B
ModBaseQ9P546Database of comparative protein structure models
STRINGQ9P546Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59441340S ribosomal protein S0B
RefSeq mRNANM_001019843972h- 40S ribosomal protein S0B (rps002), mRNA
European Nucleotide ArchiveCAB92099.1ENA Protein Mapping
UniParcUPI0000134B8FUniProt Archive

Literature for rps002

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014