rps002 (SPAPJ698.02c)


Gene Standard Namerps002 Characterisation Statuspublished
Systematic IDSPAPJ698.02c Feature Typeprotein coding
Synonymsrps0, rps0-2, rpsa-2 Name Description
Product40S ribosomal protein S0B Product Size287aa, 31.42 kDa
Genomic Location Chromosome I, 4037624-4036533 (1092nt); CDS:4037586-4036723 (864nt)

Ensembl Gene Location
  1. mak2
  2. rfc3
  3. rps002
  4. prp12
  5. cut20
GO Molecular Function
Term NameCount
protein binding851
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation468
Annotation ExtensionEvidenceWith/FromReference
ribosomal small subunit assembly5
Annotation ExtensionEvidenceWith/FromReference
ribosomal small subunit biogenesis55
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2316
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit65
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
viable vegetative cell populationrps002ΔNull3783
unnamed (unrecorded)

Cell Phenotype

Term NameAlleleExpressionCount
viable vegetative cell with normal cell morphologyrps002ΔNull3092
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
140376244036533

UTRs

Region Coordinates Reference
five_prime_UTR4037624..4037587PMID:21511999
exon4037586..4036723
mRNA4037624..4036533
three_prime_UTR4036722..4036533AU007799
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00318 Pfam IPR001865 Ribosomal protein S2 120 187 3
PF00318 Pfam IPR001865 Ribosomal protein S2 21 117 3
PS00963 Prosite Patterns IPR018130 Ribosomal protein S2, conserved site 122 146 2
PTHR11489 HMMPANTHER IPR005707 Ribosomal protein S2, eukaryotic/archaeal 4 256 2
3.40.50.10490 Gene3D 35 218 5
SSF52313 SuperFamily IPR023591 Ribosomal protein S2, flavodoxin-like domain 15 203 3
Coil ncoils Rabaptin coiled-coil domain 213 234 968
MF_03015 hamap IPR027498 Ribosomal protein S2, eukaryotic 5 273 2
PR00395 PRINTS IPR001865 Ribosomal protein S2 97 114 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 18 36 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 139 150 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 160 174 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 48 57 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 122 139 3
TIGR01012 tigrfam IPR005707 Ribosomal protein S2, eukaryotic/archaeal 16 208 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.48 Da
Charge -9.50
Isoelectric point 4.70
Molecular weight 31.42 kDa
Number of residues 287
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1670
present during mitotic M phase, cellular response to thiabendazoleS46
present during cellular response to thiabendazoleT107
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S46 PMID:21712547
present during cellular response to thiabendazole IDA S46 PMID:18257517
present during cellular response to thiabendazole IDA T107 PMID:18257517
phosphorylated residue 1923
Annotation ExtensionEvidenceResidueReference
NAS PMID:18257517
IDA PMID:19547744
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
664270during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
655292during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
670801during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
631216during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
627915during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
247523.34during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
55243.82during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
120during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
10during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4604
conserved in eukaryotes4516
conserved in bacteria1000
conserved in metazoa3432
conserved in vertebrates3407
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured byhhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
affinity captured byhhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
affinity captured bypaa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:24634168
affinity captured byrps2140S ribosomal protein S21 Affinity Capture-WesternPMID:14623272
External References
Database Identifier Description
NBRP SPAPJ698.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAPJ698.02c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAPJ698.02c BioGRID Interaction Datasets
Expression Viewer SPAPJ698.02c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAPJ698.02c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAPJ698.02c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAPJ698.02c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAPJ698.02c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAPJ698.02c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAPJ698.02c Cell Cycle Data
GEO SPAPJ698.02c GEO profiles
PInt SPAPJ698.02c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAPJ698.02c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAPJ698.02c Fission yeast phenotypic data & analysis
UniProtKB/SwissProtQ9P54640S ribosomal protein S0-B
ModBaseQ9P546Database of comparative protein structure models
STRINGQ9P546Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59441340S ribosomal protein S0B
RefSeq mRNANM_001019843972h- 40S ribosomal protein S0B (rps002), mRNA
European Nucleotide ArchiveCAB92099.1ENA Protein Mapping
UniParcUPI0000134B8FUniProt Archive

Literature for rps002

Search: Europe PMC or PubMed

Release Version: PomBase:25_49 - 02 Feb 2015