SPATRNACYS.03


Gene Standard NameUnassigned Characterisation Status
Systematic IDSPATRNACYS.03 Feature TypetRNA
Synonyms Name Description
ProducttRNA Cysteine Product Size73nt
Genomic Location Chromosome I, 3700665-3700737, 73nt

Ensembl Gene Location
GO Molecular Function
Term NameCount
UGC codon-amino acid adaptor activity7
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translational elongation194
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytoplasm4209
Annotation ExtensionEvidenceWith/FromReference
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3700665..3700737
CDS3700665..3700737
Sequence
Gene Expression

Quantitative Gene Expression

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
7.5during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
2.7during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
External References
Database Identifier Description
NBRP SPATRNACYS.03 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPATRNACYS.03 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPATRNACYS.03 BioGRID Interaction Datasets
Expression Viewer SPATRNACYS.03 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPATRNACYS.03 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPATRNACYS.03 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPATRNACYS.03 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPATRNACYS.03 Polyadenylation Viewer (Gullerova lab)
pombeTV SPATRNACYS.03 Transcriptome Viewer (Bähler Lab)
GEO SPATRNACYS.03 GEO profiles
PInt SPATRNACYS.03 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPATRNACYS.03 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPATRNACYS.03 Fission yeast phenotypic data & analysis
Cyclebase SPATRNACYS.03.1 Cell Cycle Data

Literature for SPATRNACYS.03

Search: Europe PMC or PubMed

Release Version: PomBase:26_53 - 27 May 2015