SPATRNAMET.01


Gene Standard NameUnassigned Characterisation Status
Systematic IDSPATRNAMET.01 Feature TypetRNA
Synonyms Name Description
ProducttRNA Methionine Product Size72nt
Genomic Location Chromosome I, 1096474-1096545, 72nt

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0033425CAU codon-amino acid adaptor activityRCAGO_REF:00000017
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051445
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005737cytoplasmRCAGO_REF:00000014198
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
110964741096545
Sequence
Gene Expression

Quantitative Gene Expression

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
200during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
Orthologs

Orthologs in Compara


External References
Database Identifier Description
NBRP SPATRNAMET.01 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPATRNAMET.01 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPATRNAMET.01 BioGRID Interaction Datasets
Expression Viewer SPATRNAMET.01 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPATRNAMET.01 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPATRNAMET.01 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPATRNAMET.01 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPATRNAMET.01 Polyadenylation Viewer (Gullerova lab)
pombeTV SPATRNAMET.01 Transcriptome Viewer (Bähler Lab)
Cyclebase SPATRNAMET.01 Cell Cycle Data
GEO SPATRNAMET.01 GEO profiles
PInt SPATRNAMET.01 Protein-Protein Interaction Predictor (Bähler Lab)
European Nucleotide ArchiveV01360ENA EMBL mapping

Literature for SPATRNAMET.01

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014