SPATRNAMET.01


Gene Standard NameUnassigned Characterisation Status
Systematic IDSPATRNAMET.01 Feature TypetRNA
Synonyms Name Description
ProducttRNA Methionine Product Size72nt
Genomic Location Chromosome I, 1096474-1096545, 72nt

Ensembl Gene Location
GO Molecular Function
Term NameCount
AUG codon-amino acid adaptor activity7
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation465
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytoplasm4209
Annotation ExtensionEvidenceWith/FromReference
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons1096474..1096545
CDS1096474..1096545V01360
Sequence
Gene Expression

Quantitative Gene Expression

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
200during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
External References
Database Identifier Description
NBRP SPATRNAMET.01 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPATRNAMET.01 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPATRNAMET.01 BioGRID Interaction Datasets
Expression Viewer SPATRNAMET.01 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPATRNAMET.01 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPATRNAMET.01 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPATRNAMET.01 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPATRNAMET.01 Polyadenylation Viewer (Gullerova lab)
pombeTV SPATRNAMET.01 Transcriptome Viewer (Bähler Lab)
GEO SPATRNAMET.01 GEO profiles
PInt SPATRNAMET.01 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPATRNAMET.01 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPATRNAMET.01 Fission yeast phenotypic data & analysis
Cyclebase SPATRNAMET.01.1 Cell Cycle Data

Literature for SPATRNAMET.01

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015