rsv2 (SPBC1105.14)


Gene Standard Namersv2 Characterisation Statuspublished
Systematic IDSPBC1105.14 Feature Typeprotein coding
SynonymsSPNCRNA.422, SPNG1836 Name Description
Producttranscription factor Rsv2 Product Size637aa, 69.08 kDa
Genomic Location Chromosome II, 3530760-3535288 (4529nt); CDS:3532931-3534844 (1914nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0000978RNA polymerase II core promoter proximal region sequence-specific DNA bindingISOSGD:S000002178GO_REF:000002494
GO:0000982RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activityISOSGD:S000002178GO_REF:000002491
GO:0046872metal ion bindingIEAUniProtKB-KW:KW-0479GO_REF:0000037748
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0045944positive regulation of transcription from RNA polymerase II promoter81
during meiotic cell cycleIEPPMID:17927811
GO:0045893positive regulation of transcription, DNA-templated91
during meiotic cell cycleIEPPMID:17927811
GO:0006357regulation of transcription from RNA polymerase II promoterISOSGD:S000002178GO_REF:0000024262
GO:0006366transcription from RNA polymerase II promoterISOSGD:S000002178GO_REF:0000024139
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005634nucleusIDAPMID:168233722737
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrsv2ΔNullPECO:0000005, PECO:0000137PMID:236978063751
Microscopynot recorded (unrecorded)PMID:17927811
Microscopyrsv2ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001Microscopyrsv2ΔNullPECO:0000005, PECO:0000137PMID:23697806
Target Of
OntologyRelationshipGeneProductReference
GO regulated by mei4 meiotic forkhead transcription factor Mei4 PMID:17927811
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
135307603531250
235312963535288
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00096 Pfam IPR007087 Zinc finger, C2H2 584 603 5
PF00096 Pfam IPR007087 Zinc finger, C2H2 610 635 5
SM00355 SMART IPR015880 Zinc finger, C2H2-like 580 603 19
SM00355 SMART IPR015880 Zinc finger, C2H2-like 610 635 19
PS50157 Prosite Profiles IPR007087 Zinc finger, C2H2 572 608 20
PTHR10032:SF180 HMMPANTHER 25 637 1
PTHR10032 HMMPANTHER IPR027775 C2H2- zinc finger protein family 25 637 2
3.30.160.60 Gene3D IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain 609 636 15
SSF57667 SuperFamily 583 632 26

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000137zinc finger proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000137
PBO:0000153zf-C2H2 typeTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000153

Protein Properties

Ave. residue weight 108.45 Da
Charge 1.00
Isoelectric point 6.60
Molecular weight 69.08 kDa
Number of residues 637
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineS299PMID:217125471670
present during mitotic M phase
S299PMID:24763107
present during mitotic M phaseS418PMID:21712547
present during mitotic M phaseS420PMID:21712547
MOD:00696phosphorylated residueNASPMID:195477441922
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelincreased in presence of purvalanol A expression microarray evidencePMID:22840777

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
NDduring GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2.2during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
1.9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Misc
DescriptionQualifierReferenceCount
deletion mutant expression profiling PMID:1792781178
Warning
DescriptionQualifierReferenceCount
previously annotated as ncRNA21
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi only620
conserved in fungi4599
conserved in eukaryotes4514
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ubp11ubiquitin C-terminal hydrolase Ubp11 Negative GeneticPMID:22681890
SPCC1840.07cphosphoprotein phosphatase (predicted) Positive GeneticPMID:22681890
SPBC21D10.08cconserved fungal protein Positive GeneticPMID:22681890
nse5Smc5-6 complex non-SMC subunit Nse5 Synthetic Growth DefectPMID:18931302
hip4histone promoter control protein Hip4 Positive GeneticPMID:18818364
mga2IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted) Negative GeneticPMID:18818364
mug166Schizosaccharomyces specific protein Negative GeneticPMID:22681890
SPCC24B10.02cNAD/NADH kinase (predicted) Negative GeneticPMID:22681890
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Positive GeneticPMID:18818364
fep1iron-sensing transcription factor Fep1 Negative GeneticPMID:22681890
SPAC29E6.07Schizosaccharomyces pombe specific protein Positive GeneticPMID:22681890
vph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Negative GeneticPMID:18818364
ddb1damaged DNA binding protein Ddb1 Negative GeneticPMID:22681890
gdh1NADP-specific glutamate dehydrogenase Gdh1 (predicted) Negative GeneticPMID:22681890
fas1fatty acid synthase beta subunit Fas1 Negative GeneticPMID:22681890
atg1801WD repeat protein involved in autophagy Atg18a Positive GeneticPMID:22681890
gyp1GTPase activating protein Gyp1 (predicted) Negative GeneticPMID:22681890
SPCC737.06cglutamate-cysteine ligase regulatory subunit (predicted) Negative GeneticPMID:22681890
pst2Clr6 histone deacetylase complex subunit Pst2 Phenotypic EnhancementPMID:19547744
dad2DASH complex subunit Dad2 Positive GeneticPMID:22681890
SPBC29A10.16ccytochrome b5 (predicted) Negative GeneticPMID:22681890
SPCC569.06S. pombe specific multicopy membrane protein family 1 Negative GeneticPMID:22681890
gld1mitochondrial glycerol dehydrogenase Gld1 Negative GeneticPMID:22681890
pzh1serine/threonine protein phosphatase Pzh1 Negative GeneticPMID:22681890
amo1nuclear rim protein Amo1 Negative GeneticPMID:18818364
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:18818364
SPCC1393.09cRWD domain protein, implicated in translation Positive GeneticPMID:22681890
SPAC5D6.04auxin family transmembrane transporter (predicted) Positive GeneticPMID:22681890
mug151mouse transcriptional regulator, HCNGP-like (predicted) Negative GeneticPMID:22681890
SPBP16F5.05cribosome biogenesis protein Nop8 (predicted) Negative GeneticPMID:22681890
SPAC212.06cDNA helicase in rearranged telomeric region, truncated Negative GeneticPMID:22681890
nse6Smc5-6 complex non-SMC subunit Nse6 Negative GeneticPMID:22681890
idp1isocitrate dehydrogenase Idp1 (predicted) Negative GeneticPMID:22681890
rrg9mitochondrial genome maintenance protein Rrg9 (predicted) Negative GeneticPMID:22681890
otu1ubiquitin-specific cysteine protease, OTU family, Otu1 Positive GeneticPMID:22681890
rpl170260S ribosomal protein L17 (predicted) Negative GeneticPMID:22681890
vps3CORVET complex subunit, GTPase regulator Vps3 (predicted) Negative GeneticPMID:22681890
SPAC1A6.03cphospholipase (predicted) Negative GeneticPMID:22681890
rps00140S ribosomal protein S0A (p40) Negative GeneticPMID:22681890
myp2myosin II heavy chain Myo3 Positive GeneticPMID:18818364
SPAC3H8.02sec14 cytosolic factor family phosphatidylinositol transporter (predicted) Negative GeneticPMID:22681890
ftp105Ubp5 interacting protein Ftp105 Negative GeneticPMID:18818364
mug14adducin Negative GeneticPMID:22681890
gpa2heterotrimeric G protein alpha-2 subunit Gpa2 Positive GeneticPMID:22681890
cip2RNA-binding protein Cip2 Positive GeneticPMID:22681890
SPAC1610.02cmitochondrial ribosomal protein subunit L1 (predicted) Negative GeneticPMID:22681890
ure2urease Ure2 Positive GeneticPMID:22681890
ura3dihydroorotate dehydrogenase Ura3 Positive GeneticPMID:22681890
SPAC186.09pyruvate decarboxylase (predicted) Negative GeneticPMID:22681890
amt2ammonium transporter Amt2 Positive GeneticPMID:22681890
spf38U5 snRNP complex subunit Spf38 Negative GeneticPMID:22681890
SPAC1296.01cphosphoacetylglucosamine mutase (predicted) Negative GeneticPMID:22681890
ulp1SUMO deconjugating enzyme Ulp1 Negative GeneticPMID:22681890
SPAC227.05prefoldin subunit 4 (predicted) Negative GeneticPMID:22681890
hob3BAR adaptor protein Hob3 Negative GeneticPMID:22681890
moe1translation initiation factor eIF3d Moe1 Negative GeneticPMID:22681890
gmh5alpha-1,2-galactosyltransferase (predicted) Negative GeneticPMID:22681890
SPCPB16A4.06cSchizosaccharomyces specific protein Positive GeneticPMID:22681890
SPAC26A3.11amidohydrolase (predicted) Positive GeneticPMID:22681890
SPAC13A11.06pyruvate decarboxylase (predicted) Negative GeneticPMID:18818364
SPBC1271.14glutamate N-acetyltransferase (predicted) Negative GeneticPMID:22681890
cph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Negative GeneticPMID:18818364
est1telomerase regulator Est1 Negative GeneticPMID:18818364
erf4palmitoyltransferase complex subunit Erf4 Negative GeneticPMID:22681890
SPBC1861.07elongin C (predicted) Negative GeneticPMID:18818364
hrp3ATP-dependent DNA helicase Hrp3 Negative GeneticPMID:22681890
gsk3serine/threonine protein kinase Gsk3 Negative GeneticPMID:22681890
ssa1heat shock protein Ssa1 (predicted) Positive GeneticPMID:22681890
SPAC6G9.15cSchizosaccharomyces specific protein Negative GeneticPMID:22681890
air1zinc knuckle TRAMP complex subunit Air1 Positive GeneticPMID:18818364
for3formin For3 Synthetic Growth DefectPMID:18931302
coq5C-methyltransferase (predicted) Negative GeneticPMID:22681890
elp2elongator complex subunit Elp2 (predicted) Positive GeneticPMID:18818364
sde2silencing defective protein Sde2 Negative GeneticPMID:22681890
SPAC19A8.11crecombination protein Irc6 (predicted) Negative GeneticPMID:22681890
SPBC1271.09glycerophosphodiester transporter (predicted) Positive GeneticPMID:22681890
SPAC977.17MIP water channel (predicted) Negative GeneticPMID:22681890
trm10tRNA m(1)G methyltransferase Trm10 Positive GeneticPMID:18818364
set1histone lysine methyltransferase Set1 Negative GeneticPMID:18818364
iwr1RNA polymerase II nuclear import protein Iwr1 (predicted) Negative GeneticPMID:18818364
puf3RNA-binding protein Puf3 (predicted) Positive GeneticPMID:18818364
amt1ammonium transporter Amt1 Negative GeneticPMID:22681890
snf5SWI/SNF complex subunit Snf5 Negative GeneticPMID:22681890
cwf16splicing factor Cwf16 Negative GeneticPMID:22681890
rok1ATP-dependent RNA helicase Rok1 (predicted) Negative GeneticPMID:18818364
SPCC132.03Schizosaccharomyces specific protein Positive GeneticPMID:22681890
SPAC9G1.07Schizosaccharomyces specific protein Positive GeneticPMID:22681890
SPBPB2B2.05peptidase family C26 protein Negative GeneticPMID:22681890
thi4bifunctional thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase Positive GeneticPMID:22681890
git5heterotrimeric G protein beta subunit Git5 Positive GeneticPMID:22681890
mug20Schizosaccharomyces specific protein Negative GeneticPMID:22681890
SPBC1347.08cribonuclease H2 complex subunit (predicted) Negative GeneticPMID:18818364
SPAC6G9.14RNA-binding protein (predicted) Positive GeneticPMID:22681890
arp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:18818364
pkp1mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted) Positive GeneticPMID:22681890
SPBPB2B2.09c2-dehydropantoate 2-reductase (predicted) Negative GeneticPMID:22681890
ppr8mitochondrial PPR repeat protein Ppr8 Negative GeneticPMID:22681890
SPAC27D7.02cGRIP domain protein (predicted) Negative GeneticPMID:22681890
get1GET complex subunit Get1 (predicted) Negative GeneticPMID:18818364
eme1Holliday junction resolvase subunit Eme1 Negative GeneticPMID:22681890
sec28coatomer epsilon subunit (predicted) Positive GeneticPMID:18818364
SPBC365.16conserved protein Negative GeneticPMID:22681890
SPAC823.09cthreonine aspartase (predicted) Positive GeneticPMID:22681890
any1arrestin-related endocytic adaptor Any1 Negative GeneticPMID:22681890
reb1RNA polymerase I transcription termination factor Reb1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
raf1CLRC ubiquitin E3 ligase complex specificiy factor Raf1/Dos1 Negative GeneticPMID:18818364
SPAC17H9.08mitochondrial coenzyme A transporter (predicted) Negative GeneticPMID:22681890
mrc1mediator of replication checkpoint 1 Negative GeneticPMID:18818364
pyp1tyrosine phosphatase Pyp1 Synthetic Growth DefectPMID:18931302
Negative GeneticPMID:22681890
rpl35b60S ribosomal protein L35a (predicted) Positive GeneticPMID:22681890
SPAC2F7.17mitochondrial peptide chain release factor (predicted) Negative GeneticPMID:22681890
scs7sphingosine hydroxylase Scs7 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
SPBC1685.05serine protease (predicted) Positive GeneticPMID:22681890
mad1mitotic spindle checkpoint protein Mad1 Negative GeneticPMID:18818364
Negative GeneticPMID:22681890
rxt2histone deacetylase complex subunit Rxt2 Phenotypic EnhancementPMID:19547744
rer1Rer1 family protein (predicted) Negative GeneticPMID:22681890
cwf21complexed with Cdc5 protein Cwf21 Negative GeneticPMID:18818364
SPBC16H5.12cconserved fungal protein Negative GeneticPMID:22681890
mei2RNA-binding protein involved in meiosis Mei2 Negative GeneticPMID:22681890
ssr3SWI/SNF and RSC complex subunit Ssr3 Positive GeneticPMID:22681890
SPAC3A12.06csodium/calcium exchanger (predicted) Negative GeneticPMID:22681890
adn2transcription factor (predicted) Negative GeneticPMID:22681890
SPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:18818364
mkh1MEK kinase (MEKK) Mkh1 Negative GeneticPMID:22681890
rho3Rho family GTPase Rho3 Negative GeneticPMID:22681890
ppk38Ark1/Prk1 family protein kinase Ppk38 Negative GeneticPMID:22681890
mug154conserved fungal protein Negative GeneticPMID:18818364
gpd3glyceraldehyde 3-phosphate dehydrogenase Gpd3 Negative GeneticPMID:22681890
SPCC584.01csulfite reductase NADPH flavoprotein subunit (predicted) Positive GeneticPMID:22681890
upf3up-frameshift suppressor 3 family protein (predicted) Synthetic Growth DefectPMID:18931302
pdi5protein disulfide isomerase (predicted) Positive GeneticPMID:22681890
SPAC24B11.12cP-type ATPase (predicted) Negative GeneticPMID:22681890
SPBC3E7.11cDNAJ protein Caj1/Djp1-type (predicted) Negative GeneticPMID:22681890
SPAC23A1.07ubiquitin-protein ligase E3 (predicted) Positive GeneticPMID:18818364
SPCC1235.01Schizosaccharomyces specific protein Negative GeneticPMID:22681890
SPBC1348.01S. pombe specific DUF999 protein family 5 Negative GeneticPMID:22681890
tos4FHA domain protein Tos4 (predicted) Negative GeneticPMID:18818364
SPBC12C2.03cmethionine synthase reductase (predicted) Negative GeneticPMID:22681890
SPBC409.16crecombination protein Saw1 (predicted) Positive GeneticPMID:22681890
SPBC1709.14peptide N-glycanase (predicted) Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPBC1105.14 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1105.14 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC1105.14 BioGRID Interaction Datasets
Expression Viewer SPBC1105.14 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC1105.14 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC1105.14 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC1105.14 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC1105.14 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC1105.14 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC1105.14 Cell Cycle Data
GEO SPBC1105.14 GEO profiles
PInt SPBC1105.14 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC1105.14 Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN26/26F12Orfeome Localization Data
UniProtKB/SwissProtQ9Y815Zinc finger protein rsv2
ModBaseQ9Y815Database of comparative protein structure models
STRINGQ9Y815Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596470transcription factor Rsv2
European Nucleotide ArchiveCAB50977.1ENA Protein Mapping
UniParcUPI000006994DUniProt Archive

Literature for rsv2

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014