rsv2 (SPBC1105.14)

Gene Standard Namersv2 ChromosomeII
Systematic IDSPBC1105.14 Gene Start3530760
SynonymsSPNCRNA.422, SPNG1836 Gene End3535288
Producttranscription factor Rsv2 Gene Length4529
Feature Typeprotein coding CDS Start3532931
Name Description CDS End3534844
Characterisation Statuspublished CDS Length1914

Ensembl Gene Location
  1. rav1
  2. SPNCRNA.1610
  3. hht3
  4. SPNCRNA.1611
  5. hhf3
  6. rsv2
  7. SPBC1105.13c
  8. htd2
  9. new19
  10. rpr2
  11. cnp1
  12. SPBC1105.18c
  13. SPBC887.01
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyrsv2delta (deletion)deletionPMID:20473289
no_name (unrecorded)unrecordedPMID:17927811
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0000978RNA polymerase II core promoter proximal region sequence-specific DNA bindingISOSGD:S000002178GO_REF:0000024
GO:0008270zinc ion bindingIEAIPR007087GO_REF:0000002
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0010673positive regulation of transcription from RNA polymerase II promoter during meiosisIEPPMID:17927811
GO:0033554cellular response to stressIEPPMID:12529438
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
135307603531250
235312963535288

References

Region Start End Reference
three_prime_UTR35348453535288PMID:21511999
three_prime_UTR35348453535288PMID:21511999
five_prime_UTR35307603531250PMID:21511999
five_prime_UTR35312963532930PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00096 IPR007087 Pfam Zinc finger, C2H2 610 635 3
PF00096 IPR007087 Pfam Zinc finger, C2H2 584 603 3
SM00355 IPR015880 SMART Zinc finger, C2H2-like 580 603 28
SM00355 IPR015880 SMART Zinc finger, C2H2-like 610 635 28
PS50157 IPR007087 Prosite Profiles Zinc finger, C2H2 572 608 20
SSF57667 SuperFamily 583 632 26
PTHR10032:SF118 hmmpanther 1 637 1
PTHR10032 hmmpanther 1 637 2

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:19547744

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000137zinc finger proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000137
PBO:0000153zf-C2H2 typeTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000153

Protein Properties

Ave. residue weight 108.45 Da
Charge 1.00
Isoelectric point 6.60
Molecular weight 69.08 kDa
Number of residues 637
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
deletion mutant expression profiling PMID:17927811
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexpression microarray evidenceincreasedPMID:22840777
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2.2PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.9PMID:23101633
Warning
DescriptionQualifierReference
previously annotated as ncRNA
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
cwf21complexed with Cdc5 protein Cwf21 Negative GeneticPMID:18818364
SPAC3H8.02sec14 cytosolic factor family phosphatidylinositol transporter (predicted) Negative GeneticPMID:22681890
SPAC637.06alpha-1,2-galactosyltransferase (predicted) Negative GeneticPMID:22681890
rrg9mitochondrial genome maintenance protein Rrg9 (predicted) Negative GeneticPMID:22681890
SPAC13A11.06pyruvate decarboxylase (predicted) Negative GeneticPMID:18818364
spf38U5 snRNP complex subunit Spf38 Negative GeneticPMID:22681890
mug154conserved fungal protein Negative GeneticPMID:18818364
SPAC1610.02cmitochondrial ribosomal protein subunit L1 (predicted) Negative GeneticPMID:22681890
idp1isocitrate dehydrogenase Idp1 (predicted) Negative GeneticPMID:22681890
fep1iron-sensing transcription factor Fep1 Negative GeneticPMID:22681890
SPAC29E6.07sequence orphan Positive GeneticPMID:22681890
SPBC365.16conserved protein Negative GeneticPMID:22681890
dad2DASH complex subunit Dad2 Positive GeneticPMID:22681890
ura3dihydroorotate dehydrogenase Ura3 Positive GeneticPMID:22681890
snf5SWI/SNF complex subunit Snf5 Negative GeneticPMID:22681890
rho3Rho family GTPase Rho3 Negative GeneticPMID:22681890
reb1RNA polymerase I transcription termination factor Reb1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
mrc1mediator of replication checkpoint 1 Negative GeneticPMID:18818364
gpa2heterotrimeric G protein alpha-2 subunit Gpa2 Positive GeneticPMID:22681890
pzh1serine/threonine protein phosphatase Pzh1 Negative GeneticPMID:22681890
otu1ubiquitin-specific cysteine protease, OTU family, Otu1 Positive GeneticPMID:22681890
pst2Clr6 histone deacetylase complex subunit Pst2 Phenotypic EnhancementPMID:19547744
gpd3glyceraldehyde 3-phosphate dehydrogenase Gpd3 Negative GeneticPMID:22681890
gdh1NADP-specific glutamate dehydrogenase Gdh1 (predicted) Negative GeneticPMID:22681890
SPBC18H10.20cendocytosis regulator (predicted) Negative GeneticPMID:22681890
SPCC132.03sequence orphan Positive GeneticPMID:22681890
gld1mitochondrial glycerol dehydrogenase Gld1 Negative GeneticPMID:22681890
SPAC977.17MIP water channel (predicted) Negative GeneticPMID:22681890
rpl170260S ribosomal protein L17 (predicted) Negative GeneticPMID:22681890
SPAC17H9.08mitochondrial coenzyme A transporter (predicted) Negative GeneticPMID:22681890
gyp1GTPase activating protein Gyp1 (predicted) Negative GeneticPMID:22681890
erf4palmitoyltransferase complex subunit Erf4 (predicted) Negative GeneticPMID:22681890
SPCC584.01csulfite reductase NADPH flavoprotein subunit (predicted) Positive GeneticPMID:22681890
vph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Negative GeneticPMID:18818364
SPCC1393.09cRWD domain protein, implicated in translation Positive GeneticPMID:22681890
SPCC569.06S. pombe specific multicopy membrane protein family 1 Negative GeneticPMID:22681890
hrp3ATP-dependent DNA helicase Hrp3 Negative GeneticPMID:22681890
ppr8mitochondrial PPR repeat protein Ppr8 Negative GeneticPMID:22681890
elp2elongator complex subunit Elp2 (predicted) Positive GeneticPMID:18818364
SPAC212.06cDNA helicase in rearranged telomeric region, truncated Negative GeneticPMID:22681890
SPAC5D6.04auxin family transmembrane transporter (predicted) Positive GeneticPMID:22681890
SPBC1271.14glutamate N-acetyltransferase (predicted) Negative GeneticPMID:22681890
amt2ammonium transporter Amt2 Positive GeneticPMID:22681890
SPBC1709.14peptide N-glycanase (predicted) Positive GeneticPMID:22681890
mug14adducin Negative GeneticPMID:22681890
rer1Rer1 family protein (predicted) Negative GeneticPMID:22681890
SPBC1348.01S. pombe specific DUF999 protein family 5 Negative GeneticPMID:22681890
SPAC23A1.07ubiquitin-protein ligase E3 (predicted) Positive GeneticPMID:18818364
trm10tRNA m(1)G methyltransferase Trm10 (predicted) Positive GeneticPMID:18818364
SPBC21D10.08csequence orphan Positive GeneticPMID:22681890
SPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:18818364
SPAC27D7.02cGRIP domain protein (predicted) Negative GeneticPMID:22681890
nse6Smc5-6 complex non-SMC subunit Nse6 Negative GeneticPMID:22681890
SPBP16F5.05cribosome biogenesis protein Nop8 (predicted) Negative GeneticPMID:22681890
raf1Rik1-associated factor Raf1 Negative GeneticPMID:18818364
SPAC24B11.12cP-type ATPase (predicted) Negative GeneticPMID:22681890
SPBC1347.08cribonuclease H2 complex subunit (predicted) Negative GeneticPMID:18818364
moe1translation initiation factor eIF3d Moe1 Negative GeneticPMID:22681890
pyp1tyrosine phosphatase Pyp1 Synthetic Growth DefectPMID:18931302
Negative GeneticPMID:22681890
ure2urease Ure2 Positive GeneticPMID:22681890
upf3up-frameshift suppressor 3 family protein (predicted) Synthetic Growth DefectPMID:18931302
ddb1damaged DNA binding protein Ddb1 Negative GeneticPMID:22681890
git5heterotrimeric G protein beta subunit Git5 Positive GeneticPMID:22681890
ftp105Ubp5 interacting protein Ftp105 Negative GeneticPMID:18818364
mad1mitotic spindle checkpoint protein Mad1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
cip2RNA-binding protein Cip2 Positive GeneticPMID:22681890
SPAC2F7.17mitochondrial peptide chain release factor (predicted) Negative GeneticPMID:22681890
ubp11ubiquitin C-terminal hydrolase Ubp11 Negative GeneticPMID:22681890
SPAC823.09cthreonine aspartase (predicted) Positive GeneticPMID:22681890
SPAC1296.01cphosphoacetylglucosamine mutase (predicted) Negative GeneticPMID:22681890
SPAC227.05prefoldin subunit 4 (predicted) Negative GeneticPMID:22681890
SPAC9G1.07sequence orphan Positive GeneticPMID:22681890
rok1ATP-dependent RNA helicase Rok1 (predicted) Negative GeneticPMID:18818364
iwr1RNA polymerase II nuclear import protein Iwr1 (predicted) Negative GeneticPMID:18818364
est1telomerase regulator Est1 Negative GeneticPMID:18818364
puf3RNA-binding protein Puf3 (predicted) Positive GeneticPMID:18818364
SPAC6G9.15csequence orphan Negative GeneticPMID:22681890
SPBC12C2.03cmethionine synthase reductase (predicted) Negative GeneticPMID:22681890
SPAC6G9.14RNA-binding protein (predicted) Positive GeneticPMID:22681890
SPAC3A12.06csodium/calcium exchanger (predicted) Negative GeneticPMID:22681890
hob3BAR adaptor protein Hob3 Negative GeneticPMID:22681890
set1histone lysine methyltransferase Set1 Negative GeneticPMID:18818364
rpl35b60S ribosomal protein L35a (predicted) Positive GeneticPMID:22681890
mga2IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted) Negative GeneticPMID:18818364
SPAC186.09pyruvate decarboxylase (predicted) Negative GeneticPMID:22681890
SPBC1861.07elongin C (predicted) Negative GeneticPMID:18818364
SPCC1840.07cphosphoprotein phosphatase (predicted) Positive GeneticPMID:22681890
SPCC24B10.02cNAD/NADH kinase (predicted) Negative GeneticPMID:22681890
SPCPB16A4.06csequence orphan Positive GeneticPMID:22681890
arp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:18818364
fas1fatty acid synthase beta subunit Fas1 Negative GeneticPMID:22681890
sde2silencing defective protein Sde2 Negative GeneticPMID:22681890
thi4bifunctional thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase Positive GeneticPMID:22681890
pkp1mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted) Positive GeneticPMID:22681890
gsk3serine/threonine protein kinase Gsk3 Negative GeneticPMID:22681890
coq5C-methyltransferase (predicted) Negative GeneticPMID:22681890
get1GET complex subunit Get1 (predicted) Negative GeneticPMID:18818364
SPCC1235.01sequence orphan Negative GeneticPMID:22681890
SPBC1271.09glycerophosphodiester transporter (predicted) Positive GeneticPMID:22681890
rxt2histone deacetylase complex subunit Rxt2 Phenotypic EnhancementPMID:19547744
SPCC737.06cglutamate-cysteine ligase regulatory subunit (predicted) Negative GeneticPMID:22681890
ppk38Ark1/Prk1 family protein kinase Ppk38 Negative GeneticPMID:22681890
SPAP14E8.02FHA domain protein Tos4 (predicted) Negative GeneticPMID:18818364
myp2myosin II heavy chain Myo3 Positive GeneticPMID:18818364
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Positive GeneticPMID:18818364
ssr3SWI/SNF and RSC complex subunit Ssr3 Positive GeneticPMID:22681890
adn2transcription factor (predicted) Negative GeneticPMID:22681890
for3formin For3 Synthetic Growth DefectPMID:18931302
air1zinc knuckle TRAMP complex subunit Air1 Positive GeneticPMID:18818364
ulp1SUMO deconjugating enzyme Ulp1 Negative GeneticPMID:22681890
atg18WD repeat protein involved in autophagy Atg18a Positive GeneticPMID:22681890
amt1ammonium transporter Amt1 Negative GeneticPMID:22681890
cph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Negative GeneticPMID:18818364
amo1nuclear rim protein Amo1 Negative GeneticPMID:18818364
cwf16splicing factor Cwf16 Negative GeneticPMID:22681890
mug166sequence orphan Negative GeneticPMID:22681890
SPBPB2B2.05peptidase family C26 protein Negative GeneticPMID:22681890
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:18818364
scs7sphingosine hydroxylase Scs7 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
rps00140S ribosomal protein S0A (p40) Negative GeneticPMID:22681890
SPBC29A10.16ccytochrome b5 (predicted) Negative GeneticPMID:22681890
SPBC16H5.12cconserved fungal protein Negative GeneticPMID:22681890
SPCC1840.08cprotein disulfide isomerase (predicted) Positive GeneticPMID:22681890
SPBC1685.05serine protease (predicted) Positive GeneticPMID:22681890
sec28coatomer epsilon subunit (predicted) Positive GeneticPMID:18818364
mug20sequence orphan Negative GeneticPMID:22681890
SPBC409.16crecombination protein Saw1 (predicted) Positive GeneticPMID:22681890
eme1Holliday junction resolvase subunit Eme1 Negative GeneticPMID:22681890
SPBPB2B2.09c2-dehydropantoate 2-reductase (predicted) Negative GeneticPMID:22681890
mug151mouse transcriptional regulator, HCNGP-like (predicted) Negative GeneticPMID:22681890
vps3CORVET complex subunit, GTPase regulator Vps3 (predicted) Negative GeneticPMID:22681890
mei2RNA-binding protein involved in meiosis Mei2 Negative GeneticPMID:22681890
SPBC3E7.11cDNAJ protein Caj1/Djp1-type (predicted) Negative GeneticPMID:22681890
SPAC26A3.11amidohydrolase Positive GeneticPMID:22681890
mkh1MEK kinase (MEKK) Mkh1 Negative GeneticPMID:22681890
SPAC1A6.03cphospholipase (predicted) Negative GeneticPMID:22681890
ssa1heat shock protein Ssa1 (predicted) Positive GeneticPMID:22681890
SPAC19A8.11crecombination protein Irc6 (predicted) Negative GeneticPMID:22681890
nse5Smc5-6 complex non-SMC subunit Nse5 Synthetic Growth DefectPMID:18931302
hip4histone promoter control protein Hip4 Positive GeneticPMID:18818364
Contact Curators
External References
Database Identifier Description
NBRP SPBC1105.14 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1105.14 Retrieval of eukaryotic orthologs
BioGrid SPBC1105.14 BioGRID Interaction Datasets
Bähler Lab SPBC1105.14 Cell Cycle Expression Profile
Bähler Lab SPBC1105.14 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC1105.14 Pheromone response/mating expression profiles
Bähler Lab SPBC1105.14 Environmental stress expression profiles
Bähler Lab SPBC1105.14 Bähler Lab Transcriptome Viewer
Cyclebase SPBC1105.14 Cell Cycle Data
PInt SPBC1105.14 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC1105.14 Entrez Gene
WikiGene2539604transcription factor Rsv2
Uniprot_genenameRSV2
EntrezGene2539604transcription factor Rsv2
SPD / RIKEN26/26F12Orfeome Localization Data
UniProtKB/SwissProtQ9Y815Zinc finger protein rsv2
ModBaseQ9Y815Database of comparative protein structure models
Pfam Protein DomainsQ9Y815Pfam Domain Arrangement
RefSeq PeptideNP_596469sequence orphan
RefSeq PeptideNP_596470transcription factor Rsv2
RefSeq mRNANM_001022388972h- sequence orphan (SPBC1105.13c), mRNA
RefSeq mRNANM_001022389972h- transcription factor Rsv2 (rsv2), mRNA
European Nucleotide ArchiveCAB50977ENA Protein Mapping
UniParcUPI000006994DUniProt Archive

Literature for rsv2
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013