mug96 (SPBC1271.06c)


Gene Standard Namemug96 Characterisation Statussequence_orphan
Systematic IDSPBC1271.06c Feature Typeprotein coding
Synonyms Name DescriptionMeiotically Upregulated Gene
ProductSchizosaccharomyces pombe specific protein Product Size146aa, 17.29 kDa
Genomic Location Chromosome II, 359903-360366 (464nt); CDS:359903-360343 (441nt)

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0007126meiotic nuclear divisionIEAUniProtKB-KW:KW-0469GO_REF:0000037330
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005737cytoplasmIDAPMID:168233724204
GO:0016021integral component of membraneIEAUniProtKB-KW:KW-0812GO_REF:00000371018
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopymug96ΔNullPMID:204732893751
Microscopymug96ΔNullPECO:0000005, PECO:0000137PMID:23697806
Microscopymug96ΔNullPMID:12618370

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001Microscopymug96ΔNullPECO:0000005, PECO:0000137PMID:23697806
Target Of
OntologyRelationshipGeneProductReference
FYPO affected by mutation in lsk1 P-TEFb-associated cyclin-dependent protein kinase Lsk1 PMID:22912768
FYPO affected by mutation in red5 human ZC3H3 homolog PMID:23658229
FYPO affected by mutation in sen1 ATP-dependent 5' to 3' DNA/RNA helicase Sen1 PMID:22912768
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1359903360366
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
TMhelix TMHMM 85 104 959

View domain organization at Pfam

Protein Properties

Ave. residue weight 118.44 Da
Charge 12.00
Isoelectric point 10.27
Molecular weight 17.29 kDa
Number of residues 146
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelincreased during GO:0051321experimental evidencePMID:16303567

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
NDduring GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
Schizosaccharomyces pombe specific149
Orthologs

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
erg5C-22 sterol desaturase Erg5 Positive GeneticPMID:22681890
ubp4ubiquitin C-terminal hydrolase Ubp4 Negative GeneticPMID:22681890
hus1checkpoint clamp complex protein Hus1 Positive GeneticPMID:22681890
ssp2serine/threonine protein kinase Ssp2 Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPBC1271.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1271.06c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC1271.06c BioGRID Interaction Datasets
Expression Viewer SPBC1271.06c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC1271.06c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC1271.06c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC1271.06c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC1271.06c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC1271.06c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC1271.06c Cell Cycle Data
GEO SPBC1271.06c GEO profiles
PInt SPBC1271.06c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC1271.06c Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN03/03G10Orfeome Localization Data
UniProtKB/SwissProtO94339Meiotically up-regulated gene 96 protein
ModBaseO94339Database of comparative protein structure models
STRINGO94339Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595144sequence orphan
RefSeq mRNANM_001021052972h- sequence orphan (mug96), mRNA
European Nucleotide ArchiveCAA22196.1ENA Protein Mapping
UniParcUPI0000069F1CUniProt Archive

Literature for mug96

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014