cwf22 (SPBC13E7.01)

SynonymsSPBC15D4.16 ChromosomeII
Productsplicing factor Cwf22 Gene Start3037824
Feature Typeprotein coding Gene End3040813
Name Descriptioncomplexed with Cdc5 CDS Start3037988
Characterisation Statuspublished CDS End3040650

Ensembl Gene Location
SPNCRNA.1576 mug98 SPBC15D4.13c taf73 SPNCRNA.1577 pho2 > cwf22 < cwf24 SPBC13E7.03c atp16
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
130378243040331
230403343040813

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF02854 Pfam MIF4G-like, type 3 125 307 115.5 5
PF02847 Pfam Initiation factor eIF-4 gamma, MA3 412 517 92.5 2
48371 Superfamily 111 355 220 119
SM00543 Smart MIF4G-like, type 3 124 307 172.6 5
SM00544 Smart Initiation factor eIF-4 gamma, MA3 412 518 130.2 2
PS51366 PROSITE Initiation factor eIF-4 gamma, MA3 411 527 22.897 2


Protein Modifications

Term IDDescriptionSourceAll Genes
MOD:00696phosphorylated residueTemporary processing gif - replaced by AJAX with count of genes annotated with the term MOD:00696

Protein Properties

Ave. residue weight 115.92 Da
Charge 18.00
Isoelectric point 8.81
Molecular weight 102.70 kDa
Number of residues 886
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000049inviableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000049

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0045292nuclear mRNA cis splicing, via spliceosomeISS UniProtKB:P53333GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0045292

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005681spliceosomal complexISS UniProtKB:P53333GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005681

Warning

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DescriptionSourceAll Genes
frameshifted Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000108
sequence error in genomic data Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000129

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPBC13E7.01 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC13E7.01 Retrieval of eukaryotic orthologs
BioGrid SPBC13E7.01 BioGRID Interaction Datasets
Bähler Lab SPBC13E7.01 Cell Cycle Expression Profile
Bähler Lab SPBC13E7.01 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC13E7.01 Pheromone response/mating expression profiles
Bähler Lab SPBC13E7.01 Environmental stress expression profiles
Bähler Lab SPBC13E7.01 Bähler Lab Transcriptome Viewer
Cyclebase SPBC13E7.01 Cell Cycle Data
Entrez Gene SPBC13E7.01 Link to Entrez Gene
SPD / RIKEN29/29B01Orfeome Localization Data
UniProtKB/SwissProtQ9P6R9Pre-mRNA-splicing factor cwc22
ArrayExpressQ9P6R9Link to ArrayExpress
RefSeq PeptideNP_596256splicing factor Cwf22
RefSeq mRNANM_001022175972h- splicing factor Cwf22 (cwf22), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveD89100ENA EMBL mapping
European Nucleotide ArchiveBAA13763ENA Protein Mapping
European Nucleotide ArchiveCAA20491ENA Protein Mapping
UniParcUPI000228F4A4UniProt Archive

Literature for cwf22

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Search: UK PMC or PubMed