nam9 (SPBC13G1.01c)

Gene Standard Namenam9 ChromosomeII
Systematic IDSPBC13G1.01c Gene Start3729325
Synonyms Gene End3728195
Productmitochondrial ribosomal protein subunit S4 (predicted) Gene Length1131
Feature Typeprotein coding CDS Start3729288
Name Description CDS End3728252
Characterisation Statusbiological_role_inferred CDS Length1037

Ensembl Gene Location
  1. suc22
  2. trm1
  3. SPBC25D12.06
  4. SPBC13G1.14c
  5. nam9
  6. mpg2
  7. pex14
  8. SPNCRNA.1633
  9. abh1
  10. SPBC13G1.05
  11. SPNCRNA.1634
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001489inviable vegetative cellMicroscopynam9delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingISMPFAM:PF01479GO_REF:0000001
GO:0003735structural constituent of ribosomeISSUniProtKB:P27929GO_REF:0000001
GO:0019843rRNA bindingIEAUniProtKB:KW-0699GO_REF:0000037
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006412translationISSUniProtKB:P27929GO_REF:0000001
GO:0032543mitochondrial translationNASGO_REF:0000051
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005739mitochondrionIDAPMID:16823372
GO:0005763mitochondrial small ribosomal subunitISSUniProtKB:P27929GO_REF:0000001
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
137293253729253
237291993728195

References

Region Start End Reference
five_prime_UTR37293253729289PMID:20118936
five_prime_UTR37293253729289PMID:18641648
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01479 IPR002942 Pfam RNA-binding S4 domain 97 143 7
SM00363 IPR002942 SMART RNA-binding S4 domain 96 159 8
PS50889 IPR002942 Prosite Profiles RNA-binding S4 domain 96 154 8
PS00632 IPR018079 Prosite Patterns Ribosomal protein S4/S9, N-terminal 94 118 3
G3DSA:3.10.290.10 IPR002942 Gene3D 95 153 5
SSF55174 SuperFamily 217 262 5
SSF55174 SuperFamily 4 162 5
PTHR11831:SF4 hmmpanther 60 267 1
PTHR11831 IPR022801 hmmpanther Ribosomal protein S4/S9 60 267 4

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.18 Da
Charge 30.00
Isoelectric point 10.58
Molecular weight 37.67 kDa
Number of residues 327
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide1890.17PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.47PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide3.3PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPBC13G1.01c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC13G1.01c Retrieval of eukaryotic orthologs
BioGrid SPBC13G1.01c BioGRID Interaction Datasets
Bähler Lab SPBC13G1.01c Cell Cycle Expression Profile
Bähler Lab SPBC13G1.01c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC13G1.01c Pheromone response/mating expression profiles
Bähler Lab SPBC13G1.01c Environmental stress expression profiles
Bähler Lab SPBC13G1.01c Bähler Lab Transcriptome Viewer
Cyclebase SPBC13G1.01c Cell Cycle Data
PInt SPBC13G1.01c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC13G1.01c Entrez Gene
SPD / RIKEN15/15G02Orfeome Localization Data
WikiGene2540056mitochondrial ribosomal protein subunit S4
EntrezGene2540056mitochondrial ribosomal protein subunit S4
UniProtKB/SwissProtO60063Putative 37S ribosomal protein S4-like
ModBaseO60063Database of comparative protein structure models
Pfam Protein DomainsO60063Pfam Domain Arrangement
RefSeq PeptideNP_596550mitochondrial ribosomal protein subunit S4
RefSeq mRNANM_001022471972h- mitochondrial ribosomal protein subunit S4 (nam9), mRNA
European Nucleotide ArchiveBAA13914ENA Protein Mapping
European Nucleotide ArchiveCAA18654ENA Protein Mapping
SPD / RIKEN15/15G02Orfeome Localization Data

Literature for nam9
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013