nam9 (SPBC13G1.01c)

Gene Standard Namenam9 Characterisation Statusbiological role inferred
Systematic IDSPBC13G1.01c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ribosomal protein subunit S4 (predicted) Product Size327aa, 37.67 kDa
Genomic Location Chromosome II, 3729325-3728195 (1131nt); CDS:3729288-3728252 (1037nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
rRNA binding57
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
mitochondrial translation152
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrial small ribosomal subunit32
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Single-allele Phenotypes

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationnam9Δ1443

Cell Phenotype

Term NameGenotypesCount
inviable tapered vegetative cellnam9Δ134
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3729325..3729253, 3729199..3728195
5' UTR3729325..3729289PMID:20118936
5' UTR3729325..3729289PMID:18641648
CDS3729288..3729253, 3729199..3728252
3' UTR3728251..3728195SPD253
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01479 Pfam IPR002942 RNA-binding S4 domain 97 143 7
SM00363 SMART IPR002942 RNA-binding S4 domain 96 159 6
PS50889 Prosite Profiles IPR002942 RNA-binding S4 domain 96 154 8
PS00632 Prosite Patterns IPR018079 Ribosomal protein S4, conserved site 94 118 3
PTHR11831:SF4 HMMPANTHER 53 268 1
PTHR11831 HMMPANTHER IPR022801 Ribosomal protein S4/S9 53 268 4 Gene3D IPR002942 RNA-binding S4 domain 95 153 5
SSF55174 SuperFamily 217 262 5
SSF55174 SuperFamily 4 162 5

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.18 Da
Charge 30.00
Codon Adpatation Index 0.38
Isoelectric point 10.58
Molecular weight 37.67 kDa
Number of residues 327
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1890.17during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
4781during GO:0072690PECO:0000005,
single cellmass spectrometry evidencePMID:24763107

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3.3during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
0.47during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
predominantly single copy (one to one)3090
conserved in fungi only620
conserved in fungi4604
conserved in eukaryotes4514

Manually curated orthologous groups


Orthologs in Compara

External References
Database Identifier Description
NBRP SPBC13G1.01c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC13G1.01c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC13G1.01c BioGRID Interaction Datasets
Expression Viewer SPBC13G1.01c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC13G1.01c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC13G1.01c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC13G1.01c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC13G1.01c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC13G1.01c Transcriptome Viewer (Bähler Lab)
GEO SPBC13G1.01c GEO profiles
PInt SPBC13G1.01c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC13G1.01c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC13G1.01c Fission yeast phenotypic data & analysis
Cyclebase SPBC13G1.01c.1 Cell Cycle Data
SPD / RIKEN15/15G02Orfeome Localization Data
UniProtKB/SwissProtO60063Putative 37S ribosomal protein S4-like
ModBaseO60063Database of comparative protein structure models
STRINGO60063Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596550mitochondrial ribosomal protein subunit S4 (predicted)
RefSeq mRNANM_001022471972h- mitochondrial ribosomal protein subunit S4 (predicted) (nam9), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveD89253ENA EMBL mapping
European Nucleotide ArchiveBAA13914ENA Protein Mapping
European Nucleotide ArchiveCAA18654ENA Protein Mapping
European Nucleotide ArchiveCAA18654.1ENA Protein Mapping
UniParcUPI000006C4ADUniProt Archive

Literature for nam9

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Release Version: PomBase:28_55 - 09 Sep 2015