nam9 (SPBC13G1.01c)


Gene Standard Namenam9 Characterisation Statusbiological_role_inferred
Systematic IDSPBC13G1.01c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ribosomal protein subunit S4 (predicted) Product Size327aa, 37.67 kDa
Genomic Location Chromosome II, 3729325-3728195 (1131nt); CDS:3729288-3728252 (1037nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0019843rRNA bindingIEAUniProtKB-KW:KW-0699GO_REF:000003746
GO:0003735structural constituent of ribosomeISSUniProtKB:P27929GO_REF:0000001255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0032543mitochondrial translationNASGO_REF:0000051143
GO:0006412translationISSUniProtKB:P27929GO_REF:0000001597
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005763mitochondrial small ribosomal subunitISSUniProtKB:P27929GO_REF:000000132
GO:0005739mitochondrionIDAPMID:16823372758
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopynam9ΔNullPMID:204732891315
Microscopynam9ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002111inviable bottle-shaped vegetative cell134
penetrance FYPO_EXT:0000001Microscopynam9ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
137293253729253
237291993728195

UTRs

Region Coordinates Reference
five_prime_UTR3729325..3729289PMID:20118936
five_prime_UTR3729325..3729289,3729325..3729289PMID:18641648
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01479 Pfam IPR002942 RNA-binding S4 domain 97 143 7
SM00363 SMART IPR002942 RNA-binding S4 domain 96 159 8
PS00632 Prosite Patterns IPR018079 Ribosomal protein S4, conserved site 94 118 3
PS50889 Prosite Profiles IPR002942 RNA-binding S4 domain 96 154 8
PTHR11831 HMMPANTHER IPR022801 Ribosomal protein S4/S9 53 268 4
PTHR11831:SF4 HMMPANTHER 53 268 1
3.10.290.10 Gene3D IPR002942 RNA-binding S4 domain 95 153 5
SSF55174 SuperFamily 217 262 5
SSF55174 SuperFamily 4 162 5

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.18 Da
Charge 30.00
Isoelectric point 10.58
Molecular weight 37.67 kDa
Number of residues 327
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
1890.17during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
4781during GO:0072690PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
0.47during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
3.3during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3080
conserved in fungi only603
conserved in fungi4569
conserved in eukaryotes4482
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPBC13G1.01c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC13G1.01c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC13G1.01c BioGRID Interaction Datasets
Expression Viewer SPBC13G1.01c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC13G1.01c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC13G1.01c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC13G1.01c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC13G1.01c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC13G1.01c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC13G1.01c Cell Cycle Data
GEO SPBC13G1.01c GEO profiles
PInt SPBC13G1.01c Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene2540056mitochondrial ribosomal protein subunit S4
EntrezGene2540056mitochondrial ribosomal protein subunit S4
SPD / RIKEN15/15G02Orfeome Localization Data
UniProtKB/SwissProtO60063Putative 37S ribosomal protein S4-like
ModBaseO60063Database of comparative protein structure models
STRINGO60063Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596550mitochondrial ribosomal protein subunit S4
RefSeq mRNANM_001022471972h- mitochondrial ribosomal protein subunit S4 (nam9), mRNA
European Nucleotide ArchiveD89253ENA EMBL mapping
European Nucleotide ArchiveBAA13914ENA Protein Mapping
European Nucleotide ArchiveCAA18654ENA Protein Mapping
European Nucleotide ArchiveCAA18654.1ENA Protein Mapping
UniParcUPI000006C4ADUniProt Archive

Literature for nam9

Search: Europe PMC or PubMed

Release Version: PomBase:22_44 - 08 Jul 2014