meu17 (SPBC14C8.05c)

Gene Standard Namemeu17 ChromosomeII
Systematic IDSPBC14C8.05c Gene Start2213495
Synonyms Gene End2211798
Productglucan-alpha-1,4-glucosidase Gene Length1698
Feature Typeprotein coding CDS Start2213372
Name DescriptionMeiotic Expression Upregulated CDS End2212020
Characterisation Statuspublished CDS Length1353

Ensembl Gene Location
  1. prl68
  2. tim44
  3. fma2
  4. SPBC14C8.04
  5. meu17
  6. SPNCRNA.1494
  7. arc1
  8. cdc18
  9. SPNCRNA.1495
  10. mrpl24
  11. tam10
  12. SPBC14C8.09c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0000054abnormal microtubule cytoskeleton organizationnot recorded (overexpression)unknownPMID:15797925
FYPO:0002060viable vegetative cell populationMicroscopymeu17delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0004339glucan 1,4-alpha-glucosidase activityISOSGD:S000001361GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0005980glycogen catabolic processISOSGD:S000001361GO_REF:0000024
GO:0030437ascospore formationISOSGD:S000001361GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005628prospore membraneIDAPMID:16823372
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0005794Golgi apparatusIDAPMID:16823372
GO:0009986cell surfaceNASGO_REF:0000001
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
122134952211798

References

Region Start End Reference
three_prime_UTR22120192211798PMID:21511999
five_prime_UTR22134952213373PMID:21511999
three_prime_UTR22120192211798PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00723 IPR011613 Pfam Glycoside hydrolase family 15 41 440 2
G3DSA:1.50.10.10 IPR012341 Gene3D 25 446 7
SSF48208 IPR008928 SuperFamily 24 446 9
PR00736 IPR000165 PRINTS Glucoamylase 308 327 1
PR00736 IPR000165 PRINTS Glucoamylase 131 148 1
PR00736 IPR000165 PRINTS Glucoamylase 197 215 1
PR00736 IPR000165 PRINTS Glucoamylase 395 416 1
PR00736 IPR000165 PRINTS Glucoamylase 428 443 1
PR00736 IPR000165 PRINTS Glucoamylase 59 76 1
PR00736 IPR000165 PRINTS Glucoamylase 149 168 1
SignalP-noTM signalp 1 16 212

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide

Protein Properties

Ave. residue weight 113.70 Da
Charge -11.00
Isoelectric point 4.94
Molecular weight 51.16 kDa
Number of residues 450
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
expressed during meiosis PMID:11376151
expressed during sporulation
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide0.049PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.022PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in bacteria
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
sre2membrane-tethered transcription factor (predicted) Negative GeneticPMID:21504829
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External References
Database Identifier Description
NBRP SPBC14C8.05c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC14C8.05c Retrieval of eukaryotic orthologs
BioGrid SPBC14C8.05c BioGRID Interaction Datasets
Bähler Lab SPBC14C8.05c Cell Cycle Expression Profile
Bähler Lab SPBC14C8.05c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC14C8.05c Pheromone response/mating expression profiles
Bähler Lab SPBC14C8.05c Environmental stress expression profiles
Bähler Lab SPBC14C8.05c Bähler Lab Transcriptome Viewer
Cyclebase SPBC14C8.05c Cell Cycle Data
PInt SPBC14C8.05c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC14C8.05c Entrez Gene
IntEnz3.2.1.3
EntrezGene2539682glucan-alpha-1,4-glucosidase
Uniprot_genenameMEU17
WikiGene2539682glucan-alpha-1,4-glucosidase
UniProtKB/SwissProtO60087Probable glucoamylase
ModBaseO60087Database of comparative protein structure models
Pfam Protein DomainsO60087Pfam Domain Arrangement
RefSeq PeptideNP_595908glucan-alpha-1,4-glucosidase
RefSeq mRNANM_001021816972h- glucan-alpha-1,4-glucosidase (meu17), mRNA
European Nucleotide ArchiveBAB60870ENA Protein Mapping
European Nucleotide ArchiveCAA18423ENA Protein Mapping
SPD / RIKEN21/21A04Orfeome Localization Data
UniParcUPI0000125A82UniProt Archive

Literature for meu17
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013