tts1 (SPBC1539.04)


Gene Standard Nametts1 Characterisation Statuspublished
Systematic IDSPBC1539.04 Feature Typeprotein coding
Synonyms Name DescriptionTeTra Spanning protein
Producttetra spanning protein 1, Tts1 Product Size279aa, 31.57 kDa
Genomic Location Chromosome II, 4368286-4369816 (1531nt); CDS:4368389-4369414 (1026nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005515protein bindingIPISPBC651.13cPMID:20434336861
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0034613cellular protein localization552
localizes rtn1IMPPMID:20434336
GO:0071786endoplasmic reticulum tubular network organization3
in cell cortexIMPPMID:20434336
GO:0071790establishment of spindle pole body localization to nuclear envelopeIGIcut11PMID:204343363
GO:1902408mitotic cytokinesis, site selectionIMPPMID:204343366
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005794Golgi apparatusIDAPMID:16823372355
GO:0032153cell division site296
during mitotic cell cycleIDAPMID:8873452
GO:0032541cortical endoplasmic reticulumIDAPMID:204343365
GO:0005783endoplasmic reticulumIDAPMID:16823372593
GO:0016021integral component of membraneISSTMHMMGO_REF:00000241017
GO:0005635nuclear envelopeIDAPMID:20434336137
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopytts1ΔNullPECO:0000005, PECO:0000137PMID:236978063730
Microscopytts1ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000032abnormal cytokinesisMicroscopynot recorded (unrecorded)PMID:20434336144
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001Microscopytts1ΔNullPECO:0000005, PECO:0000137PMID:23697806
Target Of
OntologyRelationshipGeneProductReference
GO localized by rtn1 reticulon-like protein Rtn1 PMID:20434336
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
143682864368448
243686354369816

UTRs

Region Coordinates Reference
five_prime_UTR4368286..4368388PMID:21511999
three_prime_UTR4369415..4369816PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF03661 Pfam IPR005344 Uncharacterised protein family UPF0121 25 256 1
TMhelix TMHMM 25 47 959
TMhelix TMHMM 57 79 959
TMhelix TMHMM 170 192 959
TMhelix TMHMM 100 122 959
PTHR12703 HMMPANTHER 2 267 1
PTHR12703:SF4 HMMPANTHER 2 267 1

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReferenceCount
SO:0000418signal_peptide278
SO:0001812transmembrane_helix465

Protein Properties

Ave. residue weight 113.15 Da
Charge 25.00
Isoelectric point 11.09
Molecular weight 31.57 kDa
Number of residues 279
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelincreased during GO:0034605expression microarray evidencePMID:12529438
increased in presence of cadmium sulfate expression microarray evidencePMID:12529438
increased during GO:0071470expression microarray evidencePMID:12529438
increased in presence of methyl methanesulfonate expression microarray evidencePMID:12529438
increased during GO:0034599expression microarray evidencePMID:12529438

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
12057during GO:0000080PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
12617during GO:0000084PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
11542during GO:0000085PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
11394during GO:0000087PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
10809during GO:0072690PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
6577.81during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
7921.96during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
9.3during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
1.8during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3080
conserved in fungi4569
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3393
conserved in eukaryotes only2487
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
yop1ER membrane protein DP1/Yop1 Phenotypic EnhancementPMID:20434336
scs2VAP family protein Scs2 Phenotypic SuppressionPMID:23041194
rtn1reticulon-like protein Rtn1 Phenotypic EnhancementPMID:20434336
scs22VAP family protein Scs22 Phenotypic SuppressionPMID:23041194
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
rtn1reticulon-like protein Rtn1 Co-purificationPMID:20434336
External References
Database Identifier Description
NBRP SPBC1539.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1539.04 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC1539.04 BioGRID Interaction Datasets
Expression Viewer SPBC1539.04 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC1539.04 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC1539.04 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC1539.04 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC1539.04 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC1539.04 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC1539.04 Cell Cycle Data
GEO SPBC1539.04 GEO profiles
PInt SPBC1539.04 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC1539.04 Peptides identified in tandem mass spectrometry proteomics experiments
WikiGene2539923conserved eukaryotic protein
EntrezGene2539923conserved eukaryotic protein
SPD / RIKEN15/15D12Orfeome Localization Data
UniProtKB/SwissProtQ9Y7Z5Tetra-spanning protein 1
ModBaseQ9Y7Z5Database of comparative protein structure models
STRINGQ9Y7Z5Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596818conserved eukaryotic protein
RefSeq mRNANM_001023838972h- conserved eukaryotic protein (SPBC1539.04), mRNA
European Nucleotide ArchiveCAB51336ENA Protein Mapping
European Nucleotide ArchiveCAB51336.1ENA Protein Mapping
UniParcUPI000006AA70UniProt Archive

Literature for tts1

Search: Europe PMC or PubMed

Release Version: PomBase:22_45 - 08 Aug 2014