amo1 (SPBC15D4.10c)

Gene Standard Nameamo1 ChromosomeII
Systematic IDSPBC15D4.10c Gene Start3030224
Synonyms Gene End3028685
Productnuclear rim protein Amo1 Gene Length1540
Feature Typeprotein coding CDS Start3030192
Name DescriptionAberrent Microtubules when Overexpressed CDS End3028705
Characterisation Statuspublished CDS Length1488

Ensembl Gene Location
  1. SPNCRNA.1573
  2. SPBC15D4.05
  3. naa30
  4. atg9
  5. SPBC15D4.08c
  6. SPNCRNA.1574
  7. SPBC15D4.09c
  8. SPNCRNA.1575
  9. amo1
  10. SPBC15D4.11c
  11. SPNCRNA.1576
  12. mug98
  13. SPBC15D4.13c
  14. taf73
  15. SPNCRNA.1577
  16. pho2
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0000016curved cellno_name (unrecorded)unrecordedPMID:15797925
FYPO:0002060viable vegetative cell populationMicroscopyamo1delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0008270zinc ion bindingIEAIPR000571GO_REF:0000002
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0030951establishment or maintenance of microtubule cytoskeleton polarityIMPPMID:15797925
GO:0031115negative regulation of microtubule polymerization
requiredIMPPMID:15797925
happens_during interphase of mitotic cell cycle
GO:0031122cytoplasmic microtubule organizationIMPPMID:15797925
GO:0040023establishment of nucleus localizationIMPPMID:15797925
GO:0071963establishment or maintenance of cell polarity regulating cell shapeIGItea1PMID:15797925
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
NOT GO:0005643nuclear poreIDAPMID:15797925
NOT GO:0005816spindle pole bodyIDAPMID:15797925
GO:0031965nuclear membraneIDAPMID:15797925
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
130302243028938
230288773028685

References

Region Start End Reference
three_prime_UTR30287043028685PMID:20118936
three_prime_UTR30287043028685PMID:20118936
three_prime_UTR30287043028685PMID:18641648
three_prime_UTR30287043028685PMID:18641648
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PS50103 IPR000571 Prosite Profiles Zinc finger, CCCH-type 1 25 14
Coil ncoils Rabaptin coiled-coil domain 111 132 974
PTHR21495:SF1 hmmpanther 1 302 1
PTHR21495 hmmpanther 1 302 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000137zinc finger proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000137
PBO:0000416zf-CCCH typeTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000416

Protein Properties

Ave. residue weight 109.04 Da
Charge 4.00
Isoelectric point 8.59
Molecular weight 51.79 kDa
Number of residues 475
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.6PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.38PMID:23101633
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
but1neddylation pathway protein But1 Positive GeneticPMID:18818364
ptc2protein phosphatase 2C Ptc2 Negative GeneticPMID:18818364
rhn1RNA polymerase II transcription termination factor homolog Negative GeneticPMID:18818364
SPBP8B7.23ubiquitin-protein ligase E3 implicated in transcription (predicted) Negative GeneticPMID:18818364
tea2kinesin-like protein Tea2 Negative GeneticPMID:18818364
cwf21complexed with Cdc5 protein Cwf21 Positive GeneticPMID:18818364
pdx1pyruvate dehydrogenase protein x component, Pdx1 (predicted) Negative GeneticPMID:18818364
SPBC26H8.05cserine/threonine protein phosphatase (predicted) Negative GeneticPMID:18818364
clr4histone H3 lysine methyltransferase Clr4 Negative GeneticPMID:18818364
sdc1Dpy-30 domain protein Sdc1 Negative GeneticPMID:18818364
nup40nucleoporin Nup40 Negative GeneticPMID:18818364
trm13tRNA 2'-O-methyltransferase Trm13 (predicted) Positive GeneticPMID:18818364
hip1hira protein, histone chaperone Hip1 Negative GeneticPMID:18818364
eaf1RNA polymerase II transcription elongation factor SpEAF Positive GeneticPMID:18818364
ppk8serine/threonine protein kinase Ppk8 (predicted) Negative GeneticPMID:18818364
SPBC16C6.05mitochondrial translation initiation factor (predicted) Negative GeneticPMID:18818364
hta1histone H2A alpha Positive GeneticPMID:18818364
nap1nucleosome assembly protein Nap1 Positive GeneticPMID:18818364
pmk1MAP kinase Pmk1 Positive GeneticPMID:18818364
utp4U3 snoRNP protein Utp4 (predicted) Negative GeneticPMID:18818364
dad1DASH complex subunit Dad1 Negative GeneticPMID:18818364
reb1RNA polymerase I transcription termination factor Reb1 Negative GeneticPMID:18818364
lub1WD repeat protein Lub1 Negative GeneticPMID:18818364
obr1ubiquitinated histone-like protein Uhp1 Positive GeneticPMID:18818364
ppk16serine/threonine protein kinase Ppk16 (predicted) Negative GeneticPMID:18818364
SPCC18.10pyridoxine-pyridoxal-pyridoxamine kinase (predicted) Negative GeneticPMID:18818364
sir2Sir2 family histone deacetylase Sir2 Negative GeneticPMID:18818364
ngg1SAGA complex subunit Ngg1 Negative GeneticPMID:18818364
SPBC29A3.09cAAA family ATPase Gcn20 (predicted) Negative GeneticPMID:18818364
rcd1RNA-binding protein, CCR4-NOT complex subunit Rcd1 Negative GeneticPMID:18818364
syj2inositol-polyphosphate 5-phosphatase, synaptojanin homolog 2 (predicted) Negative GeneticPMID:18818364
spn1septin Spn1 Negative GeneticPMID:18818364
rhp7Rad7 homolog Rhp7 Negative GeneticPMID:18818364
sdh4TIM22 inner membrane protein import complex anchor subunit Tim18 Negative GeneticPMID:18818364
ers1RNA-silencing factor Ers1 Positive GeneticPMID:18818364
chp1chromodomain protein Chp1 Negative GeneticPMID:18818364
pmp1dual-specificity MAP kinase phosphatase Pmp1 Negative GeneticPMID:18818364
rad26ATRIP, ATR checkpoint kinase regulatory subunit Rad26 Negative GeneticPMID:18818364
SPAC227.14uridine kinase (predicted) Negative GeneticPMID:18818364
set5histone lysine methyltransferase Set5 (predicted) Negative GeneticPMID:18818364
ubp3ubiquitin C-terminal hydrolase Ubp3 Positive GeneticPMID:18818364
rad57RecA family ATPase Rad57/Rhp57 Negative GeneticPMID:18818364
SPBC839.03cneddylation protein Dcn1 (predicted) Negative GeneticPMID:18818364
SPBC1773.02cthioredoxin peroxidase (predicted) Positive GeneticPMID:18818364
rpa12DNA-directed RNA polymerase complex I subunit Rpa12 Negative GeneticPMID:18818364
ies2Ino80 complex subunit Ies2 Positive GeneticPMID:18818364
SPAC323.03csequence orphan Negative GeneticPMID:18818364
epe1Jmjc domain chromatin associated protein Epe1 Positive GeneticPMID:18818364
mod21gamma tubulin complex subunit Mod21 Positive GeneticPMID:18818364
elp3elongator complex, histone acetyltransferase subunit Elp3 (predicted) Negative GeneticPMID:18818364
swc5Swr1 complex subunit Swc5 Positive GeneticPMID:18818364
nup60nucleoporin Nup60 Negative GeneticPMID:18818364
nup131nucleoporin Nup131 Negative GeneticPMID:18818364
rem1meiosis-specific cyclin Rem1 Negative GeneticPMID:18818364
mlo2ubiquitin protein ligase E3 component human N-recognin 7 homolog Mlo2 Positive GeneticPMID:18818364
hrp3ATP-dependent DNA helicase Hrp3 Positive GeneticPMID:18818364
rpl160160S ribosomal protein L13/L16 (predicted) Positive GeneticPMID:18818364
SPCC645.13transcription elongation regulator (predicted) Negative GeneticPMID:18818364
rhp26SNF2 family helicase Rhp26 Negative GeneticPMID:18818364
fkbp39FKBP-type peptidyl-prolyl cis-trans isomerase (predicted) Negative GeneticPMID:18818364
fft3fun thirty related protein Fft3 Negative GeneticPMID:18818364
SPAC23A1.07ubiquitin-protein ligase E3 (predicted) Positive GeneticPMID:18818364
tfs1transcription elongation factor TFIIS Positive GeneticPMID:18818364
swd1Set1C complex subunit Swd1 Positive GeneticPMID:18818364
SPBC16G5.03ubiquitin-protein ligase E3 (predicted) Negative GeneticPMID:18818364
bag101BAG family molecular chaperone regulator Bag101 (predicted) Negative GeneticPMID:18818364
cid12poly(A) polymerase Cid12 Positive GeneticPMID:18818364
set9histone lysine methyltransferase Set9 Negative GeneticPMID:18818364
kap113karyopherin Kap113 Positive GeneticPMID:18818364
rsv2transcription factor Rsv2 Negative GeneticPMID:18818364
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:18818364
tma20RNA-binding protein Tma20 (predicted) Negative GeneticPMID:18818364
klp6kinesin-like protein Klp6 Positive GeneticPMID:18818364
mre11Mre11 nuclease Negative GeneticPMID:18818364
ura5orotate phosphoribosyltransferase Ura5 Negative GeneticPMID:18818364
sum2G2/M transition checkpoint protein Sum2 Negative GeneticPMID:18818364
klp3kinesin-like protein Klp3 Positive GeneticPMID:18818364
srb11cyclin CycC, Srb mediator subunit Srb11 Negative GeneticPMID:18818364
ebs1EST1 family nonsense-mediated mRNA decay (NMD) pathway protein Ebs1 (predicted) Negative GeneticPMID:18818364
ppk14serine/threonine protein kinase Ppk14 (predicted) Negative GeneticPMID:18818364
rev7DNA polymerase zeta Rev7 (predicted) Negative GeneticPMID:18818364
sgf29SAGA complex subunit Sgf29 Positive GeneticPMID:18818364
SPBP8B7.10cU3 snoRNP-associated protein Utp16 (predicted) Negative GeneticPMID:18818364
bub3mitotic spindle checkpoint protein Bub3 Positive GeneticPMID:18818364
mms19Dos2 silencing complex subunit Mms19 Positive GeneticPMID:18818364
hht2histone H3 h3.2 Negative GeneticPMID:18818364
rox3mediator complex subunit Med19/Rox3 Negative GeneticPMID:18818364
dsk1SR protein-specific kinase Dsk1 Positive GeneticPMID:18818364
pht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:18818364
cdk11serine/threonine protein kinase cdk11 Negative GeneticPMID:18818364
ufd2ubiquitin-protein ligase E4 (predicted) Negative GeneticPMID:18818364
ptf1phosphoric monoester hydrolase (predicted) Negative GeneticPMID:18818364
png2ING family homolog Png2 Negative GeneticPMID:18818364
cho1phosphatidyl-N-methylethanolamine N-methyltransferase (predicted) Negative GeneticPMID:18818364
kap114karyopherin Kap14 Positive GeneticPMID:18818364
dcr1dicer Positive GeneticPMID:18818364
SPAC3A11.03methyltransferase (predicted) Negative GeneticPMID:18818364
SPBC31F10.10czf-MYND type zinc finger protein Negative GeneticPMID:18818364
elp5elongator complex subunit Elp5 (predicted) Negative GeneticPMID:18818364
SPAC1952.06cspliceosomal complex subunit (predicted) Positive GeneticPMID:18818364
gnr1heterotrimeric G protein beta subunit Gnr1 Positive GeneticPMID:18818364
ssu72phosphoric ester hydrolase Ssu72 (predicted) Negative GeneticPMID:18818364
hrp1ATP-dependent DNA helicase Hrp1 Negative GeneticPMID:18818364
mal3EB1 family Mal3 Negative GeneticPMID:18818364
hip4histone promoter control protein Hip4 Negative GeneticPMID:18818364
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External References
Database Identifier Description
NBRP SPBC15D4.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC15D4.10c Retrieval of eukaryotic orthologs
BioGrid SPBC15D4.10c BioGRID Interaction Datasets
Bähler Lab SPBC15D4.10c Cell Cycle Expression Profile
Bähler Lab SPBC15D4.10c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC15D4.10c Pheromone response/mating expression profiles
Bähler Lab SPBC15D4.10c Environmental stress expression profiles
Bähler Lab SPBC15D4.10c Bähler Lab Transcriptome Viewer
Cyclebase SPBC15D4.10c Cell Cycle Data
PInt SPBC15D4.10c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC15D4.10c Entrez Gene
EntrezGene2539911nuclear rim protein Amo1
Uniprot_genenameAMO1
WikiGene2539911nuclear rim protein Amo1
SPD / RIKEN24/24A05Orfeome Localization Data
UniProtKB/SwissProtO74315Nucleoporin-like protein amo1
ModBaseO74315Database of comparative protein structure models
Pfam Protein DomainsO74315Pfam Domain Arrangement
RefSeq PeptideNP_596250nuclear rim protein Amo1
RefSeq mRNANM_001022169972h- nuclear rim protein Amo1 (amo1), mRNA
European Nucleotide ArchiveCAA20485ENA Protein Mapping
UniParcUPI000006A222UniProt Archive

Literature for amo1
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013