SPBC15D4.13c

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Gene Standard NameUnassigned Characterisation Statusconserved unknown
Systematic IDSPBC15D4.13c Feature Typeprotein coding
Synonyms Name Description
Producthuman ASCC1 ortholog Product Size204aa, 23.81 kDa
Genomic Location Chromosome II, 3033222-3032492 (731nt); CDS:3033222-3032492 (731nt)

Ensembl Gene Location
  1. atg9
  2. SPBC15D4.08c
  3. SPBC15D4.09c-antisense-1
  4. met3
  5. amo1-antisense-1
  6. amo1
  7. SPBC15D4.11c
  8. SPNCRNA.1576
  9. mug98
  10. SPBC15D4.13c
  11. taf73
  12. taf73-antisense-1
  13. pho2
  14. cwf22
GO Cellular Component
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Term NameCount
activating signal cointegrator 1 complex4
Annotation ExtensionEvidenceWith/FromReference
cytoplasm4212
Annotation ExtensionEvidenceWith/FromReference
cytosol2298
Annotation ExtensionEvidenceWith/FromReference
nucleus2690
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

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Term NameGenotypesCount
viable vegetative cell populationSPBC15D4.13cΔ3862

Cell Phenotype

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Term NameGenotypesCount
viable vegetative cell with normal cell morphologySPBC15D4.13cΔ3103
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3033222..3032889, 3032822..3032761, 3032710..3032492
Intron3032888..3032823, 3032760..3032711
mRNA3033222..3032492
CDS3033222..3032889, 3032822..3032761, 3032710..3032492
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF10469 Pfam IPR019510 Protein kinase A anchor protein, nuclear localisation signal domain 8 200 1
PTHR13360 HMMPANTHER 8 204 1
3.90.1140.10 Gene3D IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase 7 200 2
PIRSF027019 PIRSF IPR009210 Activating signal cointegrator 1 complex subunit 1 1 204 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 116.72 Da
Charge 4.00
Codon Adaptation Index 0.42
Isoelectric point 8.19
Molecular weight 23.81 kDa
Number of residues 204
Sequence
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Gene Expression
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Quantitative Gene Expression

View graphical display of gene expression data for SPBC15D4.13c

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0.77during GO:0072690PECO:0000126,
PECO:0000005		population wideexperimental evidencePMID:23101633
0.36during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000126,
PECO:0000005		population wideexperimental evidencePMID:23101633
Disease Association
DescriptionQualifierReferenceCount
Barrats oesophagus1
Taxonomic Conservation
DescriptionQualifierReferenceCount
no apparent S. cerevisiae ortholog600
predominantly single copy (one to one)3087
conserved in fungi4608
conserved in eukaryotes4516
conserved in metazoa3498
conserved in vertebrates3473
conserved in eukaryotes only2525
Orthologs
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Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
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Database Identifier Description
NBRP SPBC15D4.13c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC15D4.13c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC15D4.13c BioGRID Interaction Datasets
Expression Viewer SPBC15D4.13c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC15D4.13c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC15D4.13c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC15D4.13c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC15D4.13c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC15D4.13c Transcriptome Viewer (Bähler Lab)
GEO SPBC15D4.13c GEO profiles
PInt SPBC15D4.13c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC15D4.13c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC15D4.13c Fission yeast phenotypic data & analysis
Cyclebase SPBC15D4.13c.1 Cell Cycle Data
SPD / RIKEN08/08G04Orfeome Localization Data
UniProtKB/SwissProtA6X982Uncharacterized protein C15D4.13c
ModBaseA6X982Database of comparative protein structure models
STRINGA6X982Network display of known and predicted interactions and functional associations
RefSeq mRNAXM_001713089972h- hypothetical protein (SPBC15D4.13c), mRNA
RefSeq PeptideXP_001713141hypothetical protein SPBC15D4.13c
European Nucleotide ArchiveCAO77666.2ENA Protein Mapping
UniParcUPI0000529EB1UniProt Archive

Literature for SPBC15D4.13c
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Search: Europe PMC or PubMed

Release Version: PomBase:30_62 - 30 Jan 2017