ght4 (SPBC1683.08)


Gene Standard Nameght4 Characterisation Statuspublished
Systematic IDSPBC1683.08 Feature Typeprotein coding
Synonyms Name Description
Producthexose transporter Ght4 Product Size557aa, 62.13 kDa
Genomic Location Chromosome II, 155751-159570 (3820nt); CDS:157555-159228 (1674nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
NOT GO:0055056D-glucose transmembrane transporter activityIMPPMID:10735857
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0035428hexose transmembrane transportTASPMID:107358578
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005887integral component of plasma membraneTASPMID:1073585750
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001829normal growth on gluconate carbon sourceCell growth assayght4ΔNullPMID:107358571
FYPO:0002060viable vegetative cell populationMicroscopyght4ΔNullPMID:204732893751
Microscopyght4ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001Microscopyght4ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1155751159570
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00083 Pfam IPR005828 General substrate transporter 10 466 15
TMhelix TMHMM 89 111 959
TMhelix TMHMM 416 438 959
TMhelix TMHMM 53 74 959
TMhelix TMHMM 369 391 959
TMhelix TMHMM 177 199 959
TMhelix TMHMM 300 322 959
TMhelix TMHMM 10 32 959
TMhelix TMHMM 266 288 959
TMhelix TMHMM 332 349 959
PS50850 Prosite Profiles IPR020846 Major facilitator superfamily domain 9 456 55
PS00217 Prosite Patterns IPR005829 Sugar transporter, conserved site 119 144 6
PS00216 Prosite Patterns IPR005829 Sugar transporter, conserved site 318 335 15
PTHR24063 HMMPANTHER 6 493 11
PTHR24063:SF98 HMMPANTHER 6 493 8
1.20.1250.20 Gene3D 261 464 72
1.20.1250.20 Gene3D 47 204 72
SSF103473 SuperFamily IPR016196 Major facilitator superfamily domain, general substrate transporter 249 465 76
SSF103473 SuperFamily IPR016196 Major facilitator superfamily domain, general substrate transporter 45 214 76
SignalP-noTM signalp 1 24 212
PR00171 PRINTS IPR003663 Sugar/inositol transporter 276 286 10
PR00171 PRINTS IPR003663 Sugar/inositol transporter 392 404 10
PR00171 PRINTS IPR003663 Sugar/inositol transporter 114 133 10
PR00171 PRINTS IPR003663 Sugar/inositol transporter 17 27 10
PR00171 PRINTS IPR003663 Sugar/inositol transporter 369 390 10
TIGR00879 tigrfam IPR003663 Sugar/inositol transporter 7 463 10

View domain organization at Pfam

Protein Properties

Ave. residue weight 111.54 Da
Charge 8.50
Isoelectric point 8.43
Molecular weight 62.13 kDa
Number of residues 557
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
NDduring GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
1095during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0.83during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4599
conserved in eukaryotes4514
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ams2cell cycle regulated GATA-type transcription factor Ams2 Negative GeneticPMID:22681890
tel2Tel2/Rad-5/Clk-2 family protein Tel2 Negative GeneticPMID:22681890
ssp2serine/threonine protein kinase Ssp2 Positive GeneticPMID:22681890
hip4histone promoter control protein Hip4 Negative GeneticPMID:22681890
tom70mitochondrial TOM complex subunit Tom70 (predicted) Negative GeneticPMID:22681890
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
SPAC19B12.11czinc finger protein, human ZNF593 ortholog Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPBC1683.08 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1683.08 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC1683.08 BioGRID Interaction Datasets
Expression Viewer SPBC1683.08 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC1683.08 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC1683.08 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC1683.08 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC1683.08 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC1683.08 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC1683.08 Cell Cycle Data
GEO SPBC1683.08 GEO profiles
PInt SPBC1683.08 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC1683.08 Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN35/35A06Orfeome Localization Data
UniProtKB/SwissProtO59932High-affinity hexose transporter ght4
ModBaseO59932Database of comparative protein structure models
STRINGO59932Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595064hexose transporter Ght4
RefSeq mRNANM_001020970972h- hexose transporter Ght4 (ght4), mRNA
European Nucleotide ArchiveAAC63976.1ENA Protein Mapping
European Nucleotide ArchiveCAB91170.1ENA Protein Mapping
UniParcUPI000012B421UniProt Archive

Literature for ght4

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014