SPBC16C6.12c

Synonyms ChromosomeII
ProductLas1-like protein Gene Start4354124
Feature Typeprotein coding Gene End4352543
Name Description CDS Start4354075
Characterisation Statusconserved_unknown CDS End4352663

Ensembl Gene Location
ogm4 chp2 rpl3201 > SPBC16C6.12c < sec27 SPNCRNA.441 SPBC244.02c sid4
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
143541244352543

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF04031 Pfam Las1-like 5 149 145.3 1

Protein Properties

Ave. residue weight 115.55 Da
Charge -19.00
Isoelectric point 4.57
Molecular weight 54.31 kDa
Number of residues 470
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000049inviableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000049

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
GO:0005635nuclear envelopeIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005635
GO:0005816spindle pole bodyIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005816

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
SPCC830.03polynucleotide kinase Grc3 (predicted) Dosage Rescue

Physical Interactions from BioGRID

Gene Feature Evidence Source
SPCC830.03polynucleotide kinase Grc3 (predicted) Affinity Capture-Western
Affinity Capture-MS
Affinity Capture-MS
crb3WD repeat protein Crb3 Affinity Capture-MS
Affinity Capture-MS
SPCC4G3.18ribosome biogenesis protein Rix1 (predicted) Affinity Capture-MS

External References

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Database Identifier Description
NBRP SPBC16C6.12c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC16C6.12c Retrieval of eukaryotic orthologs
BioGrid SPBC16C6.12c BioGRID Interaction Datasets
Bähler Lab SPBC16C6.12c Cell Cycle Expression Profile
Bähler Lab SPBC16C6.12c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC16C6.12c Pheromone response/mating expression profiles
Bähler Lab SPBC16C6.12c Environmental stress expression profiles
Bähler Lab SPBC16C6.12c Bähler Lab Transcriptome Viewer
Cyclebase SPBC16C6.12c Cell Cycle Data
Entrez Gene SPBC16C6.12c Link to Entrez Gene
SPD / RIKEN21/21G08Orfeome Localization Data
UniProtKB/SwissProtO42936LAS1-like protein
ArrayExpressO42936Link to ArrayExpress
RefSeq PeptideNP_596810Las1-like protein
RefSeq mRNANM_001023831972h- Las1-like protein (SPBC16C6.12c), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveCAA16919ENA Protein Mapping
UniParcUPI000006AC67UniProt Archive

Literature for SPBC16C6.12c

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Search: UK PMC or PubMed