psd1 (SPBC16E9.18)

Gene Standard Namepsd1 ChromosomeII
Systematic IDSPBC16E9.18 Gene Start1955636
SynonymsSPBC1E8.01 Gene End1957371
Productphosphatidylserine decarboxylase Psd1 Gene Length1736
Feature Typeprotein coding CDS Start1955709
Name Description CDS End1957022
Characterisation Statuspublished CDS Length1314

Ensembl Gene Location
  1. lsd90
  2. SPNCRNA.1480
  3. SPBC16E9.20
  4. SPNCRNA.1481
  5. SPNCRNA.571
  6. rem1
  7. psd1
  8. snR36
  9. SPBC1E8.02
  10. SPBC1E8.03c
  11. SPNCRNA.382
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001315normal cell morphology during vegetative growthMicroscopypsd1delta (deletion)deletionPECO:0000169, PECO:0000080, PECO:0000005PMID:19286980
FYPO:0002060viable vegetative cell populationMicroscopypsd1delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0004609phosphatidylserine decarboxylase activityIGIpsd2, psd3PMID:19286980
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006646phosphatidylethanolamine biosynthetic processIGIpsd2, psd3PMID:19286980
GO:0006656phosphatidylcholine biosynthetic processISSUniProtKB:P39006GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005739mitochondrionIDAPMID:16823372
GO:0005743mitochondrial inner membraneISSUniProtKB:P39006GO_REF:0000001
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
119556361957371

References

Region Start End Reference
three_prime_UTR19570231957371PMID:21511999
five_prime_UTR19556361955708PMID:21511999
three_prime_UTR19570231957371PMID:21511999
exon19557091957022PMID:19286980
mRNA19556361957371PMID:19286980
exon19557091957022PMID:19286980
mRNA19556361957371PMID:19286980
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF02666 IPR003817 Pfam Phosphatidylserine decarboxylase-related 131 430 3
TMhelix TMHMM 30 52 955
PTHR10067 IPR005221 hmmpanther Phosphatidylserine decarboxylase 69 433 3
TIGR00163 IPR005221 tigrfam Phosphatidylserine decarboxylase 118 430 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.42 Da
Charge 22.50
Isoelectric point 9.95
Molecular weight 49.13 kDa
Number of residues 437
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide851.73PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide2.7PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.66PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPBC16E9.18 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC16E9.18 Retrieval of eukaryotic orthologs
BioGrid SPBC16E9.18 BioGRID Interaction Datasets
Bähler Lab SPBC16E9.18 Cell Cycle Expression Profile
Bähler Lab SPBC16E9.18 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC16E9.18 Pheromone response/mating expression profiles
Bähler Lab SPBC16E9.18 Environmental stress expression profiles
Bähler Lab SPBC16E9.18 Bähler Lab Transcriptome Viewer
Cyclebase SPBC16E9.18 Cell Cycle Data
PInt SPBC16E9.18 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC16E9.18 Entrez Gene
WikiGene2539756phosphatidylserine decarboxylase
Uniprot_genenamePSD1
EntrezGene2539756phosphatidylserine decarboxylase
KEGGMAP00260
IntEnz4.1.1.65
KEGGMAP00561
UniProtKB/SwissProtO14333Phosphatidylserine decarboxylase proenzyme 1, mitochondrial Phosphatidylserine decarboxylase 1 beta chain Phosphatidylserine decarboxylase 1 alpha chain
ModBaseO14333Database of comparative protein structure models
Pfam Protein DomainsO14333Pfam Domain Arrangement
RefSeq PeptideNP_595799phosphatidylserine decarboxylase
RefSeq mRNANM_001021700972h- phosphatidylserine decarboxylase (SPBC16E9.18), mRNA
European Nucleotide ArchiveCAB16910ENA Protein Mapping
SPD / RIKEN22/22H06Orfeome Localization Data
UniParcUPI000006C8C3UniProt Archive

Literature for psd1
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013