SPBC16H5.13

Synonyms ChromosomeII
ProductWD repeat protein, human WDR7 ortholog Gene Start2273358
Feature Typeprotein coding Gene End2269397
Name Description CDS Start2272776
Characterisation Statusconserved_unknown CDS End2269573

Ensembl Gene Location
sfc6 SPBC21H7.06c SPNCRNA.1499 snR5 SPNCRNA.1500 his5 SPBC16H5.14c > SPBC16H5.13 < SPBC16H5.12c skb1
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
122733582273195
222729572272511
322724302271318
422712742269397

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
50978 Superfamily 28 497 48 127
TMHMM tmhmm Double transmembrane domain 339 358 0.56958 1312

Protein Properties

Ave. residue weight 112.62 Da
Charge -27.00
Isoelectric point 4.75
Molecular weight 115.55 kDa
Number of residues 1026
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
SPBC337.03RNA polymerase II transcription termination factor (predicted) Negative Genetic
SPAC227.05prefoldin subunit 4 (predicted) Negative Genetic
csn1COP9/signalosome complex subunit Csn1 Negative Genetic
alp14TOG ortholog Alp14 Negative Genetic
cwf21complexed with Cdc5 protein Cwf21 Negative Genetic
SPAC4F10.04protein phosphatase type 2A, intrinsic regulator (predicted) Negative Genetic
wpl1Wings apart-like homolog Wpl1 Negative Genetic
est1telomerase regulator Est1 Negative Genetic
pmc5mediator complex subunit Pmc5 Negative Genetic
ash2Ash2-trithorax family protein Negative Genetic
set1histone lysine methyltransferase Set1 Negative Genetic
clr3histone deacetylase (class II) Clr3 Negative Genetic
hta1histone H2A alpha Negative Genetic
aut12autophagy associated protein Aut12 (predicted) Negative Genetic
nap1nucleosome assembly protein Nap1 Negative Genetic
rec14Ski complex subunit Rec14 Negative Genetic
spf1Set1C PHD Finger protein Spf1 Negative Genetic
bdf1Swr1 complex bromodomain subunit Brf1 Negative Genetic
snf5SWI/SNF complex subunit Snf5 Negative Genetic
arp42SWI/SNF and RSC complex subunit Arp42 Negative Genetic
caf1CCR4-Not complex CAF1 family ribonuclease subunit Caf1 Negative Genetic
reb1RNA polymerase I transcription termination factor Reb1 Negative Genetic
mrc1mediator of replication checkpoint 1 Negative Genetic
amk2AMP-activated protein kinase beta subunit Amk2 Negative Genetic
ngg1SAGA complex subunit Ngg1 Negative Genetic
sir2Sir2 family histone deacetylase Sir2 Positive Genetic
rtt109RTT109 family histone lysine acetyltransferase Positive Genetic
SPCC126.07chuman CTD-binding SR-like protein rA9 homolog (predicted) Positive Genetic
chp1chromodomain protein Chp1 Negative Genetic
spo6Spo4-Spo6 kinase complex regulatory subunit Spo6 Negative Genetic
arp1centractin family actin-like protein Arp1 (predicted) Positive Genetic
zds1zds family protein phosphatase type A regulator Zds1 (predicted) Negative Genetic
set3histone lysine methyltransferase Set3 Negative Genetic
pob3FACT complex component Pob3 Negative Genetic
shg1Set1C complex subunit Shg1 Negative Genetic
SPAC12B10.01cubiquitin-protein ligase E3 (predicted) Negative Genetic
bob1prefoldin subunit 5 (predicted) Negative Genetic
swd3WD repeat protein Swd3 Negative Genetic
rsc1RSC complex subunit Rsc1 Negative Genetic
rpa12DNA-directed RNA polymerase complex I subunit Rpa12 Negative Genetic
SPAC3C7.01cinositol polyphosphate phosphatase (predicted) Negative Genetic
slx1structure-specific endonuclease catalytic subunit Positive Genetic
vph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Negative Genetic
swc5Swr1 complex subunit Swc5 Negative Genetic
set13ribosome L32 lysine methyltransferase Set13 Negative Genetic
rpl160160S ribosomal protein L13/L16 (predicted) Negative Genetic
SPAC25B8.07chypoxia induced family protein Positive Genetic
med20mediator complex subunit Med20 Negative Genetic
fkbp39FKBP-type peptidyl-prolyl cis-trans isomerase (predicted) Negative Genetic
tfs1transcription elongation factor TFIIS Negative Genetic
not2CCR4-Not complex subunit Not2 (predicted) Negative Genetic
fft2fun thirty related protein Fft2 (predicted) Positive Genetic
swd1Set1C complex subunit Swd1 Negative Genetic
nto1histone acetyltransferase complex subunit Nto1 (predicted) Negative Genetic
SPCC126.13chistone deacetylase complex subunit, SAP128 family (predicted) Negative Genetic
rsv2transcription factor Rsv2 Negative Genetic
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative Genetic
dbr1RNA lariat debranching enzyme Dbr1 Negative Genetic
tim13TIM22 inner membrane protein import complex subunit Tim13 (predicted) Positive Genetic
hos2histone deacetylase (class I) Hos2 Negative Genetic
pac10prefoldin subunit 3 Pac10 (predicted) Negative Genetic
bun107WD repeat protein, human WDR48 family Bun107 Negative Genetic
gcn5SAGA complex histone acetyltransferase catalytic subunit Gcn5 Negative Genetic
SPBC1685.04sequence orphan Positive Genetic
SPAC631.02bromodomain protein (predicted) Negative Genetic
rpb9DNA-directed RNA polymerase II complex subunit Rpb9 Negative Genetic
msa1RNA-binding protein Msa1 Negative Genetic
shk2PAK-related kinase Shk2 Positive Genetic
mms19TFIIH regulator Mms19 Negative Genetic
SPCC550.03cSki complex RNA helicase Ski2 (predicted) Negative Genetic
rhp51RecA family recombinase Rhp51 Negative Genetic
SPBC31F10.10czf-MYND type zinc finger protein Negative Genetic
pds5cohesin-associated protein Pds5 Negative Genetic
SPBC2F12.12chuman c19orf29 ortholog Negative Genetic
ssu72phosphoric ester hydrolase Ssu72 (predicted) Negative Genetic
SPBC582.10cATP-dependent DNA helicase Rhp16b (predicted) Negative Genetic


External References

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Database Identifier Description
NBRP SPBC16H5.13 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC16H5.13 Retrieval of eukaryotic orthologs
BioGrid SPBC16H5.13 BioGRID Interaction Datasets
Bähler Lab SPBC16H5.13 Cell Cycle Expression Profile
Bähler Lab SPBC16H5.13 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC16H5.13 Pheromone response/mating expression profiles
Bähler Lab SPBC16H5.13 Environmental stress expression profiles
Bähler Lab SPBC16H5.13 Bähler Lab Transcriptome Viewer
Cyclebase SPBC16H5.13 Cell Cycle Data
Entrez Gene SPBC16H5.13 Link to Entrez Gene
SPD / RIKEN48/48A07Orfeome Localization Data
UniProtKB/SwissProtO42948Uncharacterized WD repeat-containing protein C16H5.13
ArrayExpressO42948Link to ArrayExpress
RefSeq PeptideNP_595934WD repeat-containing protein
RefSeq mRNANM_001021842972h- WD repeat-containing protein (SPBC16H5.13), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveCAA17911ENA Protein Mapping
UniParcUPI000006C35FUniProt Archive

Literature for SPBC16H5.13

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Search: UK PMC or PubMed