SPBC1703.11

Synonyms ChromosomeII
Productoptic atrophy 3 family protein Gene Start2934596
Feature Typeprotein coding Gene End2936122
Name Description CDS Start2934982
Characterisation Statusconserved_unknown CDS End2935821

Ensembl Gene Location
SPNCRNA.1563 SPBC1703.07 SPBC1703.08c SPBC1703.09 ypt1 > SPBC1703.11 < SPNCRNA.1564 ubp9 SPBTRNAPRO.07 SPBC1703.13c top1
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
129345962935089
229351552935312
329354312936122

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF07047 Pfam Optic atrophy 3-like 6 135 117.9 1
TMHMM tmhmm Double transmembrane domain 79 98 0.59821 1312
SIGNALP_EUK Signalp 1 17 0 456

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0001144protein coiled-coilTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0001144

Protein Properties

Ave. residue weight 112.59 Da
Charge 9.00
Isoelectric point 10.19
Molecular weight 24.54 kDa
Number of residues 218
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005737cytoplasmIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005737

Disease Association

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DescriptionSourceAll Genes
optic atrophyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0004266
neurological disordersTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000363

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
mrc1mediator of replication checkpoint 1 Negative Genetic
syj1inositol-polyphosphate 5-phosphatase (synaptojanin homolog 1) Negative Genetic
rpl160360S ribosomal protein L13/L16 (predicted) Negative Genetic
hop1linear element associated protein Hop1 Negative Genetic
mcl1DNA polymerase alpha accessory factor Mcl1 Positive Genetic
ppk31serine/threonine protein kinase Ppk31 (predicted) Positive Genetic


External References

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Database Identifier Description
NBRP SPBC1703.11 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1703.11 Retrieval of eukaryotic orthologs
BioGrid SPBC1703.11 BioGRID Interaction Datasets
Bähler Lab SPBC1703.11 Cell Cycle Expression Profile
Bähler Lab SPBC1703.11 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC1703.11 Pheromone response/mating expression profiles
Bähler Lab SPBC1703.11 Environmental stress expression profiles
Bähler Lab SPBC1703.11 Bähler Lab Transcriptome Viewer
Cyclebase SPBC1703.11 Cell Cycle Data
Entrez Gene SPBC1703.11 Link to Entrez Gene
SPD / RIKEN11/11A04Orfeome Localization Data
UniProtKB/SwissProtQ9P7W0OPA3-like protein
ArrayExpressQ9P7W0Link to ArrayExpress
RefSeq PeptideNP_596206optic atrophy 3 family protein
RefSeq mRNANM_001022125972h- optic atrophy 3 family protein (SPBC1703.11), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveCAB66455ENA Protein Mapping
UniParcUPI0000130D54UniProt Archive

Literature for SPBC1703.11

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Search: UK PMC or PubMed