npl4 (SPBC1711.10c)

Synonyms ChromosomeII
ProductCdc48-Npl4-Ufd1 complex component Npl4 (predicted) Gene Start2154477
Feature Typeprotein coding Gene End2152031
Name Description CDS Start2154335
Characterisation Statusbiological_role_inferred CDS End2152462

Ensembl Gene Location
SPNCRNA.1490 SPBC1711.07 SPNCRNA.514 SPBC1711.08 SPBC1711.09c > npl4 < SPBC1711.11 SPBC1711.12 his2
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121544772154333
221542872154207
321541442152627
421525752152462
521524582152031

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF05021 Pfam Nuclear pore localisation protein NPL4 264 568 371 1
PF05020 Pfam NPL4, zinc-binding putative 118 261 232.3 1
PF11543 Pfam Nuclear pore localisation protein Npl4, ubiquitin-like domain 1 78 32.9 1
54236 Superfamily 1 87 44.2 27
PIRSF010052 PIRSF Polyubiquitin-tagged protein recognition complex, Npl4 component 1 572 1145 1


Protein Modifications

Term IDDescriptionSourceAll Genes
MOD:00696phosphorylated residueTemporary processing gif - replaced by AJAX with count of genes annotated with the term MOD:00696

Protein Properties

Ave. residue weight 111.22 Da
Charge -8.50
Isoelectric point 5.18
Molecular weight 63.62 kDa
Number of residues 572
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000049inviableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000049

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0030433ER-associated protein catabolic processISS SGD:S000000374GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0030433

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
GO:0005783endoplasmic reticulumISS SGD:S000000374GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005783
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829
GO:0034098Cdc48p-Npl4p-Ufd1p AAA ATPase complexISS SGD:S000000374GO_REF:0000024Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0034098
GO:0042175nuclear outer membrane-endoplasmic reticulum membrane networkISS SGD:S000000374GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0042175
( SGD:S000000374)ISS SGD:S000000374GO_REF:0000024

Warning

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DescriptionSourceAll Genes
gene structure updated Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000070

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPBC1711.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1711.10c Retrieval of eukaryotic orthologs
BioGrid SPBC1711.10c BioGRID Interaction Datasets
Bähler Lab SPBC1711.10c Cell Cycle Expression Profile
Bähler Lab SPBC1711.10c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC1711.10c Pheromone response/mating expression profiles
Bähler Lab SPBC1711.10c Environmental stress expression profiles
Bähler Lab SPBC1711.10c Bähler Lab Transcriptome Viewer
Cyclebase SPBC1711.10c Cell Cycle Data
Entrez Gene SPBC1711.10c Link to Entrez Gene
SPD / RIKEN45/45G03Orfeome Localization Data
UniProtKB/SwissProtQ9P780Nuclear protein localization protein 4
ArrayExpressQ9P780Link to ArrayExpress
RefSeq PeptideNP_595883Cdc48-Ufd1-Npl4 complex component Npl4 (predicted)
RefSeq mRNANM_001021789972h- Cdc48-Ufd1-Npl4 complex component Npl4 (predicted) (npl4), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveCAB88240ENA Protein Mapping
UniParcUPI000228F464UniProt Archive

Literature for npl4

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Search: UK PMC or PubMed