SPBC1718.04

Gene Standard NameUnassigned ChromosomeII
Systematic IDSPBC1718.04 Gene Start3475561
Synonyms Gene End3478365
Productglycerol-3-phosphate O-acyltransferase (predicted) Gene Length2805
Feature Typeprotein coding CDS Start3475916
Name Description CDS End3477995
Characterisation Statusbiological_role_inferred CDS Length2080

Ensembl Gene Location
  1. pop1
  2. hop1
  3. SPNCRNA.1602
  4. ker1
  5. SPBC1718.04
  6. trs31
  7. SPNCRNA.1603
  8. msp1
  9. zfs1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPBC1718.04delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0004366glycerol-3-phosphate O-acyltransferase activityISOSGD:S000000107GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0008654phospholipid biosynthetic processISOSGD:S000000107GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005783endoplasmic reticulumISOSGD:S000000107GO_REF:0000024
IDAPMID:16823372
GO:0005789endoplasmic reticulum membraneIEASL-0097GO_REF:0000039
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
134755613475961
234760143478365

References

Region Start End Reference
three_prime_UTR34779963478365PMID:21511999
three_prime_UTR34779963478365PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01553 IPR002123 Pfam Phospholipid/glycerol acyltransferase 25 247 4
SM00563 IPR002123 SMART Phospholipid/glycerol acyltransferase 40 250 4
TMhelix TMHMM 5 22 955
TMhelix TMHMM 480 502 955
TMhelix TMHMM 451 473 955
TMhelix TMHMM 397 419 955
SSF69593 SuperFamily 10 99 4
SSF69593 SuperFamily 191 294 4
PTHR31605:SF0 hmmpanther 1 675 1
PTHR31605 hmmpanther 1 675 1

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 113.52 Da
Charge 25.50
Isoelectric point 9.49
Molecular weight 76.63 kDa
Number of residues 675
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1980.73PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3.1PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.71PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPBC1718.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1718.04 Retrieval of eukaryotic orthologs
BioGrid SPBC1718.04 BioGRID Interaction Datasets
Bähler Lab SPBC1718.04 Cell Cycle Expression Profile
Bähler Lab SPBC1718.04 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC1718.04 Pheromone response/mating expression profiles
Bähler Lab SPBC1718.04 Environmental stress expression profiles
Bähler Lab SPBC1718.04 Bähler Lab Transcriptome Viewer
Cyclebase SPBC1718.04 Cell Cycle Data
PInt SPBC1718.04 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC1718.04 Entrez Gene
IntEnz2.3.1.15
EntrezGene2540110glycerol-3-phosphate O-acyltransferase (predicted)
WikiGene2540110glycerol-3-phosphate O-acyltransferase (predicted)
SPD / RIKEN46/46E05Orfeome Localization Data
UniProtKB/SwissProtQ9P7P0Uncharacterized acyltransferase C1718.04
ModBaseQ9P7P0Database of comparative protein structure models
Pfam Protein DomainsQ9P7P0Pfam Domain Arrangement
RefSeq PeptideNP_596450glycerol-3-phosphate O-acyltransferase (predicted)
RefSeq mRNANM_001022369972h- glycerol-3-phosphate O-acyltransferase (predicted) (SPBC1718.04), mRNA
European Nucleotide ArchiveCAB75994ENA Protein Mapping
UniParcUPI000006B46DUniProt Archive

Literature for SPBC1718.04
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013