trs31 (SPBC1718.05)


Gene Standard Nametrs31 Characterisation Statusbiological role inferred
Systematic IDSPBC1718.05 Feature Typeprotein coding
Synonyms Name Description
ProductTRAPP complex subunit Trs31 (predicted) Product Size209aa, 23.85 kDa
Genomic Location Chromosome II, 3478461-3479741 (1281nt); CDS:3478572-3479552 (981nt)

Ensembl Gene Location
GO Biological Process
Term NameCount
ER to Golgi vesicle-mediated transport74
Annotation ExtensionEvidenceWith/FromReference
intracellular protein transport316
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cis-Golgi network15
Annotation ExtensionEvidenceWith/FromReference
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
endoplasmic reticulum599
Annotation ExtensionEvidenceWith/FromReference
Golgi apparatus357
Annotation ExtensionEvidenceWith/FromReference
nuclear envelope130
Annotation ExtensionEvidenceWith/FromReference
nucleus2700
Annotation ExtensionEvidenceWith/FromReference
TRAPP complex11
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Inviable

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationtrs31Δ1455

Cell Phenotype

Term NameGenotypesCount
inviable elongated vegetative celltrs31Δ420
inviable vegetative cell with abnormal cell morphologytrs31Δ390
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3478461..3478780, 3478825..3479009, 3479110..3479234, 3479442..3479741
Intron3478781..3478824, 3479010..3479109, 3479235..3479441
mRNA3478461..3479741
5' UTR3478461..3478571PMID:21511999
CDS3478572..3478780, 3478825..3479009, 3479110..3479234, 3479442..3479552
3' UTR3479553..3479741PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04051 Pfam IPR007194 Transport protein particle (TRAPP) component 46 197 3
PTHR20902:SF0 HMMPANTHER 21 208 1
PTHR20902 HMMPANTHER IPR016696 TRAPP I complex, subunit 5 21 208 1
3.30.1380.20 Gene3D 4-vinyl reductase, 4VR 41 200 3
SSF111126 SuperFamily IPR024096 NO signalling/Golgi transport ligand-binding domain 39 207 3
PIRSF017479 PIRSF IPR016696 TRAPP I complex, subunit 5 1 209 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.12 Da
Charge 3.00
Codon Adaptation Index 0.41
Isoelectric point 8.05
Molecular weight 23.85 kDa
Number of residues 209
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for trs31 (SPBC1718.05)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2040.87during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0.71during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.24during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3093
conserved in fungi4607
conserved in eukaryotes4517
conserved in metazoa3427
conserved in vertebrates3402
conserved in eukaryotes only2502
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPBC1718.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1718.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC1718.05 BioGRID Interaction Datasets
Expression Viewer SPBC1718.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC1718.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC1718.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC1718.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC1718.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC1718.05 Transcriptome Viewer (Bähler Lab)
GEO SPBC1718.05 GEO profiles
PInt SPBC1718.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC1718.05 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC1718.05 Fission yeast phenotypic data & analysis
Cyclebase SPBC1718.05.1 Cell Cycle Data
SPD / RIKEN14/14B07Orfeome Localization Data
UniProtKB/SwissProtQ9P7N9Transport protein particle subunit trs31
ModBaseQ9P7N9Database of comparative protein structure models
STRINGQ9P7N9Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596451TRAPP complex subunit Trs31 (predicted)
RefSeq mRNANM_001022370972h- TRAPP complex subunit Trs31 (predicted) (trs31), mRNA
European Nucleotide ArchiveCAB75995.1ENA Protein Mapping
UniParcUPI000006BA44UniProt Archive

Literature for trs31

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016