SPBC1778.07

Gene Standard NameUnassigned ChromosomeII
Systematic IDSPBC1778.07 Gene Start3109892
Synonyms Gene End3111270
Productmethyltransferase N2227 family Gene Length1379
Feature Typeprotein coding CDS Start3109961
Name Description CDS End3111199
Characterisation Statusconserved_unknown CDS Length1239

Ensembl Gene Location
  1. SPBC1778.05c
  2. spo6
  3. fim1
  4. SPBC1778.07
  5. arc3
  6. SPBC1778.09
  7. ppk21
  8. pre3
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPBC1778.07delta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0008757S-adenosylmethionine-dependent methyltransferase activityISOSGD:S000005036GO_REF:0000024
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
131098923110462
231105803111270

References

Region Start End Reference
three_prime_UTR31112003111270PMID:21511999
three_prime_UTR31112003111270PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF07942 IPR012901 Pfam N2227-like 91 366 1
G3DSA:3.40.50.150 Gene3D 231 343 65
G3DSA:3.40.50.150 Gene3D 111 196 65
SSF53335 SuperFamily 107 363 68
PTHR12303:SF6 hmmpanther 2 372 1
PTHR12303 hmmpanther 2 372 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 116.18 Da
Charge -12.50
Isoelectric point 4.80
Molecular weight 43.33 kDa
Number of residues 373
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide1039.07PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.32PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide1.8PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPBC1778.07 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC1778.07 Retrieval of eukaryotic orthologs
BioGrid SPBC1778.07 BioGRID Interaction Datasets
Bähler Lab SPBC1778.07 Cell Cycle Expression Profile
Bähler Lab SPBC1778.07 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC1778.07 Pheromone response/mating expression profiles
Bähler Lab SPBC1778.07 Environmental stress expression profiles
Bähler Lab SPBC1778.07 Bähler Lab Transcriptome Viewer
Cyclebase SPBC1778.07 Cell Cycle Data
PInt SPBC1778.07 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC1778.07 Entrez Gene
WikiGene2540132methyltransferase N2227 family
EntrezGene2540132methyltransferase N2227 family
UniProtKB/SwissProtQ9Y7J3UPF0586 protein C1778.07
ModBaseQ9Y7J3Database of comparative protein structure models
Pfam Protein DomainsQ9Y7J3Pfam Domain Arrangement
RefSeq PeptideNP_596290methyltransferase N2227 family
RefSeq mRNANM_001022212972h- methyltransferase N2227 family (SPBC1778.07), mRNA
European Nucleotide ArchiveCAB39802ENA Protein Mapping
SPD / RIKEN19/19G08Orfeome Localization Data
UniParcUPI0000069E0EUniProt Archive

Literature for SPBC1778.07
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013