rpl1102 (SPBC17G9.10)


Gene Standard Namerpl1102 Characterisation Statusbiological role inferred
Systematic IDSPBC17G9.10 Feature Typeprotein coding
Synonymsrpl11-2 Name Description
Product60S ribosomal protein L11 (predicted) Product Size174aa, 19.89 kDa
Genomic Location Chromosome II, 2189654-2190349 (696nt); CDS:2189725-2190249 (525nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
rRNA binding57
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis338
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit64
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
decreased mating efficiencyrpl1102Δ272
sensitive to bortezomibrpl1102Δ255
slow vegetative cell population growthrpl1102Δ357
viable vegetative cell populationrpl1102Δ3840

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologyrpl1102Δ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2189654..2190349
mRNA2189654..2190349
5' UTR2189654..2189724PMID:21511999
CDS2189725..2190249
3' UTR2190250..2190349PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00673 Pfam IPR031309 Ribosomal protein L5, C-terminal 64 161 3
PF00281 Pfam IPR031310 Ribosomal protein L5, N-terminal 7 60 3
PS00358 Prosite Patterns IPR020929 Ribosomal protein L5, conserved site 37 53 2
PTHR11994 HMMPANTHER 4 174 3
3.30.1440.10 Gene3D IPR022803 Ribosomal protein L5 domain 3 172 3
SSF55282 SuperFamily IPR022803 Ribosomal protein L5 domain 7 171 3
PIRSF002161 PIRSF IPR002132 Ribosomal protein L5 1 171 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.32 Da
Charge 16.50
Codon Adaptation Index 0.77
Isoelectric point 10.67
Molecular weight 19.89 kDa
Number of residues 174
Modifications

Protein Modifications

Term NameResidueCount
ubiquitinylated lysineK10, K35, K49, K64, K153, K166 512
Annotation ExtensionEvidenceResidueReference
mass spectrometry evidence K10 PMID:26412298
mass spectrometry evidence K35 PMID:26412298
IDA PMID:26412298
mass spectrometry evidence K153 PMID:26412298
mass spectrometry evidence K166 PMID:26412298
mass spectrometry evidence K64 PMID:26412298
mass spectrometry evidence K49 PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rpl1102 (SPBC17G9.10)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
109060.79during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
42728.54during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
55during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
5.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4606
conserved in eukaryotes4516
conserved in bacteria1001
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPBC17G9.10 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bydsc1Golgi Dsc E3 ligase complex subunit Dsc1 Affinity Capture-MSPMID:21504829
affinity captured byair1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPBC17G9.10 into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withdsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
External References
Database Identifier Description
NBRP SPBC17G9.10 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC17G9.10 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC17G9.10 BioGRID Interaction Datasets
Expression Viewer SPBC17G9.10 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC17G9.10 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC17G9.10 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC17G9.10 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC17G9.10 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC17G9.10 Transcriptome Viewer (Bähler Lab)
GEO SPBC17G9.10 GEO profiles
PInt SPBC17G9.10 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC17G9.10 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC17G9.10 Fission yeast phenotypic data & analysis
Cyclebase SPBC17G9.10.1 Cell Cycle Data
SPD / RIKEN39/39H06Orfeome Localization Data
UniProtKB/SwissProtP0CT7760S ribosomal protein L11-A
ModBaseP0CT77Database of comparative protein structure models
STRINGP0CT77Network display of known and predicted interactions and functional associations
UniProtKB/SwissProtP0CT7860S ribosomal protein L11-B
ModBaseP0CT78Database of comparative protein structure models
STRINGP0CT78Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59589960S ribosomal protein L11
RefSeq mRNANM_001021806972h- 60S ribosomal protein L11 (rpl1102), mRNA

Literature for rpl1102

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016