rpl1102 (SPBC17G9.10)


Gene Standard Namerpl1102 Characterisation Statusbiological_role_inferred
Systematic IDSPBC17G9.10 Feature Typeprotein coding
Synonymsrpl11-2 Name Description
Product60S ribosomal protein L11 (predicted) Product Size174aa, 19.89 kDa
Genomic Location Chromosome II, 2189654-2190349 (696nt); CDS:2189725-2190249 (525nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000006306GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationISOSGD:S000006306GO_REF:0000024473
GO:0042254ribosome biogenesisISOSGD:S000006306GO_REF:0000024337
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722315
GO:0022627cytosolic small ribosomal subunitISOSGD:S000006306GO_REF:000002465
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001701sensitive to bortezomib256
expressivity FYPO_EXT:0000001Cell growth assayrpl1102ΔNullPECO:0000005, PECO:0000137PMID:21760946
FYPO:0002060viable vegetative cell populationMicroscopyrpl1102ΔNullPECO:0000005, PECO:0000137PMID:236978063759
Microscopyrpl1102ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000708decreased mating efficiencyhigh throughput nucleotide sequencing assay evidencerpl1102ΔNullPECO:0000015PMID:23950735240
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrpl1102ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121896542190349

UTRs

Region Coordinates Reference
five_prime_UTR2189654..2189724PMID:21511999
three_prime_UTR2190250..2190349PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00673 Pfam IPR002132 Ribosomal protein L5 64 144 3
PF00281 Pfam IPR002132 Ribosomal protein L5 7 60 2
PS00358 Prosite Patterns IPR020929 Ribosomal protein L5, conserved site 37 53 2
PTHR11994:SF2 HMMPANTHER 3 174 2
PTHR11994 HMMPANTHER IPR002132 Ribosomal protein L5 3 174 3
3.30.1440.10 Gene3D IPR022803 Ribosomal protein L5 domain 3 172 3
SSF55282 SuperFamily IPR022803 Ribosomal protein L5 domain 7 171 3
PIRSF002161 PIRSF IPR002132 Ribosomal protein L5 1 172 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.32 Da
Charge 16.50
Isoelectric point 10.67
Molecular weight 19.89 kDa
Number of residues 174
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
109060.79during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
42728.54during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
55during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
5.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3425
conserved in vertebrates3400
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
dsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Affinity Capture-MSPMID:21504829
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
air1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
External References
Database Identifier Description
NBRP SPBC17G9.10 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC17G9.10 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC17G9.10 BioGRID Interaction Datasets
Expression Viewer SPBC17G9.10 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC17G9.10 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC17G9.10 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC17G9.10 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC17G9.10 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC17G9.10 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC17G9.10 Cell Cycle Data
GEO SPBC17G9.10 GEO profiles
PInt SPBC17G9.10 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC17G9.10 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC17G9.10 Fission yeast phenotypic data & analysis
SPD / RIKEN39/39H06Orfeome Localization Data
UniProtKB/SwissProtQ1015760S ribosomal protein L11
ModBaseQ10157Database of comparative protein structure models
STRINGQ10157Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59589960S ribosomal protein L11
RefSeq mRNANM_001021806972h- 60S ribosomal protein L11 (rpl1102), mRNA
European Nucleotide ArchiveAB016005ENA EMBL mapping
European Nucleotide ArchiveAF201080ENA EMBL mapping
European Nucleotide ArchiveCAA93230.1ENA Protein Mapping
European Nucleotide ArchiveCAB52808.1ENA Protein Mapping
UniParcUPI0000133B8FUniProt Archive

Literature for rpl1102

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014