rpl1001 (SPBC18E5.04)


Gene Standard Namerpl1001 Characterisation Statuspublished
Systematic IDSPBC18E5.04 Feature Typeprotein coding
Synonymsrpl10, rpl10-1 Name Description
Product60S ribosomal protein L10 Product Size221aa, 25.37 kDa
Genomic Location Chromosome II, 2081255-2082343 (1089nt); CDS:2081514-2082179 (666nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation473
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2315
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrpl1001ΔNullPMID:204732893759
Microscopyrpl1001ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001315normal vegetative cell morphology3573
penetrance FYPO_EXT:0000001Microscopyrpl1001ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
120812552082343

UTRs

Region Coordinates Reference
five_prime_UTR2081255..2081513PMID:21511999
three_prime_UTR2082180..2082343PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00252 Pfam IPR016180 Ribosomal protein L10e/L16 5 166 3
PS01257 Prosite Patterns IPR018255 Ribosomal protein L10e, conserved site 108 129 2
PTHR11726 HMMPANTHER 2 221 2
3.90.1170.10 Gene3D IPR016180 Ribosomal protein L10e/L16 4 173 3
SSF54686 SuperFamily IPR016180 Ribosomal protein L10e/L16 4 173 3
PIRSF005590 PIRSF IPR001197 Ribosomal protein L10e 1 188 2
TIGR00279 tigrfam IPR001197 Ribosomal protein L10e 1 172 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.81 Da
Charge 25.50
Isoelectric point 10.61
Molecular weight 25.37 kDa
Number of residues 221
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineexperimental evidenceS205PMID:217125471670
present during mitotic M phase
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
246561during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
235941during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
220145during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
260684during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
246349during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
4320.58during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
10154.36during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
130during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
17during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in archaea237
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
cka1serine/threonine protein kinase Cka1 Affinity Capture-MSPMID:23462181
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPBC18E5.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC18E5.04 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC18E5.04 BioGRID Interaction Datasets
Expression Viewer SPBC18E5.04 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC18E5.04 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC18E5.04 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC18E5.04 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC18E5.04 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC18E5.04 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC18E5.04 Cell Cycle Data
GEO SPBC18E5.04 GEO profiles
PInt SPBC18E5.04 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC18E5.04 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC18E5.04 Fission yeast phenotypic data & analysis
SPD / RIKEN31/31G09Orfeome Localization Data
UniProtKB/SwissProtQ0912760S ribosomal protein L10-A
ModBaseQ09127Database of comparative protein structure models
STRINGQ09127Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59585060S ribosomal protein L10
RefSeq mRNANM_001021754972h- 60S ribosomal protein L10 (rpl1001), mRNA
European Nucleotide ArchiveU33214ENA EMBL mapping
European Nucleotide ArchiveCAA22664.1ENA Protein Mapping
UniParcUPI0000133CD5UniProt Archive

Literature for rpl1001

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014