rpl1001 (SPBC18E5.04)


Gene Standard Namerpl1001 Characterisation Statuspublished
Systematic IDSPBC18E5.04 Feature Typeprotein coding
Synonymsrpl10, rpl10-1 Name Description
Product60S ribosomal protein L10 Product Size221aa, 25.37 kDa
Genomic Location Chromosome II, 2081255-2082343 (1089nt); CDS:2081514-2082179 (666nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationrpl1001Δ3850

Cell Phenotype

Term NameGenotypesCount
normal vegetative cell morphologyrpl1001Δ581
Target Of
OntologyRelationshipGeneProduct
GO substrate of sst2 human AMSH/STAMBP protein homolog, ubiquitin specific-protease
GO substrate of ubp15 ubiquitin C-terminal hydrolase Ubp15
GO substrate of ubp4 ubiquitin C-terminal hydrolase Ubp4
GO substrate of ubp5 ubiquitin C-terminal hydrolase Ubp5
GO substrate of ubp9 ubiquitin C-terminal hydrolase Ubp9
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2081255..2082343
mRNA2081255..2082343
5' UTR2081255..2081513PMID:21511999
CDS2081514..2082179
3' UTR2082180..2082343PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00252 Pfam IPR016180 Ribosomal protein L10e/L16 12 166 3
PS01257 Prosite Patterns IPR018255 Ribosomal protein L10e, conserved site 108 129 2
PTHR11726 HMMPANTHER 2 216 2
3.90.1170.10 Gene3D IPR016180 Ribosomal protein L10e/L16 4 173 3
SSF54686 SuperFamily IPR016180 Ribosomal protein L10e/L16 4 173 3
PIRSF005590 PIRSF IPR001197 Ribosomal protein L10e 1 182 2
TIGR00279 TIGRFAM IPR001197 Ribosomal protein L10e 1 172 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.81 Da
Charge 25.50
Codon Adaptation Index 0.79
Isoelectric point 10.61
Molecular weight 25.37 kDa
Number of residues 221
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 2289
present during mitotic M phaseS205
S186, S205, S217
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S205 PMID:21712547
IDA S217 PMID:25720772
IDA S186 PMID:25720772
IDA S205 PMID:25720772
ubiquitinylated lysineK74 512
Annotation ExtensionEvidenceResidueReference
mass spectrometry evidence K74 PMID:26412298
IDA PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rpl1001 (SPBC18E5.04)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
246561during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
235941during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
220145during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
260684during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
4320.58during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
246349during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
10154.36during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
130during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
17during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4607
conserved in eukaryotes4517
conserved in metazoa3427
conserved in vertebrates3402
conserved in archaea242
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPBC18E5.04 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bycka1serine/threonine protein kinase Cka1 Affinity Capture-MSPMID:23462181
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
External References
Database Identifier Description
NBRP SPBC18E5.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC18E5.04 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC18E5.04 BioGRID Interaction Datasets
Expression Viewer SPBC18E5.04 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC18E5.04 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC18E5.04 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC18E5.04 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC18E5.04 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC18E5.04 Transcriptome Viewer (Bähler Lab)
GEO SPBC18E5.04 GEO profiles
PInt SPBC18E5.04 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC18E5.04 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC18E5.04 Fission yeast phenotypic data & analysis
Cyclebase SPBC18E5.04.1 Cell Cycle Data
SPD / RIKEN31/31G09Orfeome Localization Data
UniProtKB/SwissProtQ0912760S ribosomal protein L10-A
ModBaseQ09127Database of comparative protein structure models
STRINGQ09127Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59585060S ribosomal protein L10
RefSeq mRNANM_001021754972h- 60S ribosomal protein L10 (rpl1001), mRNA
European Nucleotide ArchiveU33214ENA EMBL mapping
European Nucleotide ArchiveCAA22664.1ENA Protein Mapping
UniParcUPI0000133CD5UniProt Archive

Literature for rpl1001

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016