omh1 (SPBC19C7.12c)

Gene Standard Nameomh1 ChromosomeII
Systematic IDSPBC19C7.12c Gene Start2847549
Synonyms Gene End2842901
Productalpha-1,2-mannosyltransferase Omh1 Gene Length4649
Feature Typeprotein coding CDS Start2847095
Name Description CDS End2845923
Characterisation Statuspublished CDS Length1173

Ensembl Gene Location
  1. uve1
  2. bqt4
  3. SPBC19C7.11
  4. omh1
  5. gcv3
  6. SPBP19A11.02c
  7. mts4
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0000020pear-shaped cellomh1delta (deletion)deletionPMID:19054127
FYPO:0001491viable vegetative cellomh1delta (deletion)deletionPMID:19054127
Microscopyomh1delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0000026alpha-1,2-mannosyltransferase activityISOSGD:S000002891GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0000032cell wall mannoprotein biosynthetic processISOSGD:S000002891GO_REF:0000024
GO:0035269protein O-linked mannosylationIMPPMID:19054127
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0000139Golgi membraneIDAPMID:19054127
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0005794Golgi apparatusIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
128475492842901

References

Region Start End Reference
three_prime_UTR28459222842901PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01793 IPR002685 Pfam Glycosyl transferase, family 15 63 339 6
G3DSA:3.90.550.10 Gene3D 66 385 19
SSF53448 SuperFamily 61 386 27
PIRSF018153 IPR002685 PIRSF Glycosyl transferase, family 15 1 390 5
PTHR31121 hmmpanther 2 390 6

View domain organization at Pfam

Protein Properties

Ave. residue weight 119.27 Da
Charge -11.00
Isoelectric point 5.10
Molecular weight 46.51 kDa
Number of residues 390
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide4601.42PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide5535.02PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.78PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide3PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ptc1protein phosphatase 2C Ptc1 Negative GeneticPMID:22681890
msa1RNA-binding protein Msa1 Negative GeneticPMID:22681890
ace2transcription factor Ace2 Positive GeneticPMID:22681890
prw1Clr6 histone deacetylase complex subunit Prw1 Negative GeneticPMID:22681890
mcs2TFIIH complex cyclin Mcs2 Negative GeneticPMID:22681890
dsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
nup40nucleoporin Nup40 Negative GeneticPMID:22681890
set1histone lysine methyltransferase Set1 Negative GeneticPMID:22681890
pmp1dual-specificity MAP kinase phosphatase Pmp1 Negative GeneticPMID:22681890
fft3fun thirty related protein Fft3 Positive GeneticPMID:22681890
sty1MAP kinase Sty1 Negative GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
SPBC31F10.10czf-MYND type zinc finger protein Negative GeneticPMID:22681890
gma12alpha-1,2-galactosyltransferase Gma12 Negative GeneticPMID:22681890
pom1DYRK family protein kinase Pom1 Negative GeneticPMID:22681890
atg6beclin family protein, involved in autophagy Positive GeneticPMID:22681890
vps35retromer complex subunit Vps35 Negative GeneticPMID:22681890
reb1RNA polymerase I transcription termination factor Reb1 Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPBC19C7.12c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC19C7.12c Retrieval of eukaryotic orthologs
BioGrid SPBC19C7.12c BioGRID Interaction Datasets
Bähler Lab SPBC19C7.12c Cell Cycle Expression Profile
Bähler Lab SPBC19C7.12c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC19C7.12c Pheromone response/mating expression profiles
Bähler Lab SPBC19C7.12c Environmental stress expression profiles
Bähler Lab SPBC19C7.12c Bähler Lab Transcriptome Viewer
Cyclebase SPBC19C7.12c Cell Cycle Data
PInt SPBC19C7.12c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC19C7.12c Entrez Gene
SPD / RIKEN18/18F01Orfeome Localization Data
IntEnz2.4.1.-
WikiGene2540706alpha-1,2-mannosyltransferase (predicted)
EntrezGene2540706alpha-1,2-mannosyltransferase (predicted)
UniProtKB/SwissProtO60160Uncharacterized mannosyltransferase C19C7.12c
ModBaseO60160Database of comparative protein structure models
Pfam Protein DomainsO60160Pfam Domain Arrangement
RefSeq PeptideNP_596167ClC chloride channel (predicted)
RefSeq PeptideNP_596168alpha-1,2-mannosyltransferase (predicted)
RefSeq mRNANM_001022087972h- ClC chloride channel (predicted) (SPBC19C7.11), mRNA
RefSeq mRNANM_001022088972h- alpha-1,2-mannosyltransferase (predicted) (SPBC19C7.12c), mRNA
European Nucleotide ArchiveCAA19580ENA Protein Mapping
SPD / RIKEN18/18F01Orfeome Localization Data

Literature for omh1
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013