rps3002 (SPBC19G7.03c)


Gene Standard Namerps3002 Characterisation Statusbiological role inferred
Systematic IDSPBC19G7.03c Feature Typeprotein coding
Synonyms Name Description
Product40S ribosomal protein S30 (predicted) Product Size61aa, 6.91 kDa
Genomic Location Chromosome II, 2349453-2348960 (494nt); CDS:2349435-2349078 (358nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis337
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2306
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit64
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
sensitive to cadmiumrps3002Δ249
viable vegetative cell populationrps3002Δ3831

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell, abnormal cell shape, normal cell sizerps3002Δ215
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2349453..2349397, 2349347..2349219, 2349095..2348960
Intron2349396..2349348, 2349218..2349096
5' UTR2349453..2349436PMID:21511999
3' UTR2349077..2348960SPAJ2731
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04758 Pfam IPR006846 Ribosomal protein S30 3 59 2
PTHR12650 HMMPANTHER 1 61 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.28 Da
Charge 15.50
Codon Adaptation Index 0.65
Isoelectric point 12.21
Molecular weight 6.91 kDa
Number of residues 61
Modifications

Protein Modifications

Term NameResidueCount
ubiquitinylated lysineK54 512
Annotation ExtensionEvidenceResidueReference
IDA PMID:26412298
mass spectrometry evidence K54 PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rps3002 (SPBC19G7.03c)

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
35during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
4.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
ncRNA in intron16
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4604
conserved in eukaryotes4514
conserved in metazoa3422
conserved in vertebrates3397
conserved in archaea238
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load gene that interact physically with SPBC19G7.03c into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity capturesmus7DNA repair protein Mus7/Mms22 Affinity Capture-WesternPMID:19819763
affinity captured bymus7DNA repair protein Mus7/Mms22 Affinity Capture-MSPMID:19819763
Genetic Interactions

Source: BioGRID

Load gene that interact genetically with SPBC19G7.03c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
synthetic growth defect withrad51RecA family recombinase Rad51/Rhp51 Synthetic Growth DefectPMID:19819763
synthetic growth defect withcds1replication checkpoint kinase Cds1 Synthetic Growth DefectPMID:19819763
synthetic growth defect withrqh1RecQ type DNA helicase Rqh1 Synthetic Growth DefectPMID:19819763
synthetic growth defect withfbh1DNA helicase I, ubiquitin ligase F-box adaptor Fbh1 Synthetic Growth DefectPMID:21183410
synthetic growth defect withsfr1Swi five-dependent recombination mediator Sfr1 Synthetic Growth DefectPMID:21183410
synthetic growth defect withtor1phosphatidylinositol kinase Tor1 Synthetic Growth DefectPMID:23703609
synthetic growth defect withpcn1PCNA Synthetic Growth DefectPMID:21183410
synthetic growth defect withpcu4cullin 4 Synthetic Growth DefectPMID:21183410
synthetic growth defect withspd1ribonucleotide reductase (RNR) inhibitor Synthetic Growth DefectPMID:21183410
synthetic growth defect withubc13ubiquitin conjugating enzyme E2 Ubc13 Synthetic Growth DefectPMID:21183410
synthetic lethal withrad52DNA recombination protein, Rad51 mediator Rad52 (previously Rad22) Synthetic LethalityPMID:19819763
synthetic lethal withrad51RecA family recombinase Rad51/Rhp51 Synthetic LethalityPMID:21183410
synthetic lethal withapn2AP-endonuclease Apn2 Synthetic LethalityPMID:21183410
synthetic lethal withddb1damaged DNA binding protein Ddb1 Synthetic LethalityPMID:21183410
synthetic lethal withrad13DNA repair nuclease Rad13 Synthetic LethalityPMID:21183410
synthetic lethal withrad2FEN-1 endonuclease Rad2 Synthetic LethalityPMID:21183410
synthetic lethal withrad57RecA family ATPase Rad57/Rhp57 Synthetic LethalityPMID:21183410
negative genetic interaction withnrm1MBF complex corepressor Nrm1 Negative GeneticPMID:22681890
negative genetic interaction withspc34DASH complex subunit Spc34 Negative GeneticPMID:22681890
negative genetic interaction witharp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:22681890
negative genetic interaction withclr4histone H3 lysine methyltransferase Clr4 Negative GeneticPMID:22681890
negative genetic interaction withask1DASH complex subunit Ask1 Negative GeneticPMID:22681890
negative genetic interaction withknd1Cullin-associated NEDD8-dissociated protein Knd1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withhrq1RecQ type DNA helicase Hrq1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withcdt2WD repeat protein Cdt2 Negative GeneticPMID:22681890
negative genetic interaction withphp3CCAAT-binding factor complex subunit Php3 Negative GeneticPMID:22681890
negative genetic interaction withcsn1COP9/signalosome complex subunit Csn1 Negative GeneticPMID:22681890
negative genetic interaction withrad9checkpoint clamp complex protein Rad9 Negative GeneticPMID:22681890
negative genetic interaction withphp5CCAAT-binding factor complex subunit Php5 Negative GeneticPMID:22681890
negative genetic interaction withdbl8tRNA-splicing endonuclease positive effector Dbl8 Negative GeneticPMID:22681890
negative genetic interaction withtom70mitochondrial TOM complex subunit Tom70 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withlub1WD repeat protein Lub1 Negative GeneticPMID:22681890
negative genetic interaction withrad1checkpoint clamp complex protein Rad1 Negative GeneticPMID:22681890
negative genetic interaction withfkbp39FKBP-type peptidyl-prolyl cis-trans isomerase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withago1argonaute Negative GeneticPMID:22681890
negative genetic interaction witharp8actin-like protein, Ino80 complex subunit Arp8 Negative GeneticPMID:22681890
negative genetic interaction withtfs1transcription elongation factor TFIIS Negative GeneticPMID:22681890
negative genetic interaction withtrm10tRNA m(1)G methyltransferase Trm10 Negative GeneticPMID:22681890
negative genetic interaction withrad2FEN-1 endonuclease Rad2 Negative GeneticPMID:22681890
negative genetic interaction withrnh201ribonuclease H2 complex subunit Rnh201 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withduo1DASH complex subunit Duo1 Negative GeneticPMID:22681890
negative genetic interaction withmcl1DNA polymerase alpha accessory factor Mcl1 Negative GeneticPMID:22681890
negative genetic interaction withpob3FACT complex subunit Pob3 Negative GeneticPMID:22681890
negative genetic interaction withdad4DASH complex subunit Dad4 Negative GeneticPMID:22681890
negative genetic interaction withdad3DASH complex subunit Dad3 Negative GeneticPMID:22681890
negative genetic interaction withspc19DASH complex subunit Spc19 Negative GeneticPMID:22681890
negative genetic interaction withalp13MRG family Clr6 histone deacetylase complex subunit Alp13 Negative GeneticPMID:22681890
negative genetic interaction withcwf2RNA-binding protein Cwf2 Negative GeneticPMID:22681890
negative genetic interaction withres1MBF transcription factor complex subunit Res1 Negative GeneticPMID:22681890
negative genetic interaction withapn2AP-endonuclease Apn2 Negative GeneticPMID:22681890
negative genetic interaction withSPBC839.03cneddylation protein Dcn1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withgcn20AAA family ATPase Gcn20 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmmb1mitochondrial microtubule binder Mmb1 Negative GeneticPMID:22681890
negative genetic interaction withcsn4COP9/signalosome complex subunit Csn4 Negative GeneticPMID:22681890
negative genetic interaction withase1antiparallel microtubule cross-linking factor Ase1 Negative GeneticPMID:22681890
negative genetic interaction withdam1DASH complex subunit Dam1 Negative GeneticPMID:22681890
negative genetic interaction withraf1CLRC ubiquitin E3 ligase complex specificiy factor Raf1/Dos1 Negative GeneticPMID:22681890
negative genetic interaction withsgf29SAGA complex subunit Sgf29 Negative GeneticPMID:22681890
negative genetic interaction withmug154conserved fungal protein Negative GeneticPMID:22681890
negative genetic interaction withdsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
negative genetic interaction withusp102U1 snRNP-associated protein Usp102 Negative GeneticPMID:22681890
negative genetic interaction withpnk1DNA kinase/phosphatase Pnk1 Negative GeneticPMID:22681890
negative genetic interaction withtas3RITS complex subunit 3 Negative GeneticPMID:22681890
synthetically rescued bynth1DNA endonuclease III Synthetic RescuePMID:21183410
synthetically rescued byswi1replication fork protection complex subunit Swi1 Synthetic RescuePMID:21183410
synthetically rescued bymag1DNA-3-methyladenine glycosylase Mag1 Synthetic RescuePMID:21183410
positive genetic interaction withypa2protein phosphatase type 2A regulator, PTPA family Ypa2 Positive GeneticPMID:22681890
positive genetic interaction withbob1prefoldin subunit 5 (predicted) Positive GeneticPMID:22681890
positive genetic interaction withvrp1verprolin Positive GeneticPMID:22681890
synthetically rescueshst4Sirtuin family histone deacetylase Hst4 Synthetic RescuePMID:21183410
External References
Database Identifier Description
NBRP SPBC19G7.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC19G7.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC19G7.03c BioGRID Interaction Datasets
Expression Viewer SPBC19G7.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC19G7.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC19G7.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC19G7.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC19G7.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC19G7.03c Transcriptome Viewer (Bähler Lab)
GEO SPBC19G7.03c GEO profiles
PInt SPBC19G7.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC19G7.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC19G7.03c Fission yeast phenotypic data & analysis
Cyclebase SPBC19G7.03c.1 Cell Cycle Data
SPD / RIKEN39/39G07Orfeome Localization Data
UniProtKB/SwissProtP0CT6240S ribosomal protein S30-A
ModBaseP0CT62Database of comparative protein structure models
STRINGP0CT62Network display of known and predicted interactions and functional associations
UniProtKB/SwissProtP0CT6340S ribosomal protein S30-B
ModBaseP0CT63Database of comparative protein structure models
STRINGP0CT63Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59596940S ribosomal protein S30
RefSeq mRNANM_001021877972h- 40S ribosomal protein S30 (rps3002), mRNA
European Nucleotide ArchiveAJ002731ENA EMBL mapping
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveCAA05693ENA Protein Mapping
European Nucleotide ArchiveCAA17057ENA Protein Mapping
European Nucleotide ArchiveCAC00552ENA Protein Mapping
UniParcUPI0000134F3BUniProt Archive

Literature for rps3002

Search: Europe PMC or PubMed

Release Version: PomBase:30_57 - 27 Jan 2016