rps3002 (SPBC19G7.03c)


Gene Standard Namerps3002 Characterisation Statusbiological_role_inferred
Systematic IDSPBC19G7.03c Feature Typeprotein coding
Synonymsrps30, rps30-2, ysprs30 Name Description
Product40S ribosomal protein S30 (predicted) Product Size61aa, 6.91 kDa
Genomic Location Chromosome II, 2349453-2348960 (494nt); CDS:2349435-2349078 (358nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000005708GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051445
GO:0042254ribosome biogenesisISOSGD:S000005708GO_REF:0000024325
ISOSGD:S000004486GO_REF:0000024
GO:0006412translationISOSGD:S000005708GO_REF:0000024597
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722316
GO:0022627cytosolic small ribosomal subunitISOSGD:S000005708GO_REF:000002464
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000096sensitive to cadmium246
expressivity FYPO_EXT:0000003Cell growth assayrps3002ΔNullPECO:0000102, PECO:0000005, PECO:0000137PMID:18684775
FYPO:0002060viable vegetative cell populationMicroscopyrps3002ΔNullPECO:0000005, PECO:0000137PMID:236978063730
Microscopyrps3002ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001510viable vegetative cell, abnormal cell shape, normal cell size215
expressivity FYPO_EXT:0000003
penetrance FYPO_EXT:0000001
Microscopyrps3002ΔNullPECO:0000137, PECO:0000005PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
123494532349397
223493472349219
323490952348960

UTRs

Region Coordinates Reference
five_prime_UTR2349453..2349436PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04758 Pfam IPR006846 Ribosomal protein S30 3 60 2
PTHR12650 HMMPANTHER 1 61 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.28 Da
Charge 15.50
Isoelectric point 12.21
Molecular weight 6.91 kDa
Number of residues 61
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
NDduring GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
35during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
4.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
ncRNA in intron16
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4569
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3393
conserved in archaea237
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
mis4adherin, cohesin loading factor Mis4 Negative GeneticPMID:23050226
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
External References
Database Identifier Description
NBRP SPBC19G7.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC19G7.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC19G7.03c BioGRID Interaction Datasets
Expression Viewer SPBC19G7.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC19G7.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC19G7.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC19G7.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC19G7.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC19G7.03c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC19G7.03c Cell Cycle Data
GEO SPBC19G7.03c GEO profiles
PInt SPBC19G7.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC19G7.03c Peptides identified in tandem mass spectrometry proteomics experiments
EntrezGene254060940S ribosomal protein S30
EntrezGene254260340S ribosomal protein S30
WikiGene254060940S ribosomal protein S30
WikiGene254260340S ribosomal protein S30
SPD / RIKEN39/39G07Orfeome Localization Data
UniProtKB/SwissProtO4295240S ribosomal protein S30
ModBaseO42952Database of comparative protein structure models
STRINGO42952Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59596940S ribosomal protein S30
RefSeq mRNANM_001021877972h- 40S ribosomal protein S30 (rps3002), mRNA
European Nucleotide ArchiveAJ002731ENA EMBL mapping
European Nucleotide ArchiveCAA05693ENA Protein Mapping
European Nucleotide ArchiveCAA17057ENA Protein Mapping
European Nucleotide ArchiveCAA17057.2ENA Protein Mapping
European Nucleotide ArchiveCAC00552ENA Protein Mapping
European Nucleotide ArchiveCAC00552.1ENA Protein Mapping
ReactomeREACT_188294
ReactomeREACT_188542
ReactomeREACT_188560
ReactomeREACT_206850
ReactomeREACT_210923
ReactomeREACT_215930
ReactomeREACT_226552
UniParcUPI0000134F3BUniProt Archive

Literature for rps3002

Search: Europe PMC or PubMed

Release Version: PomBase:22_45 - 08 Aug 2014