rps3002 (SPBC19G7.03c)


Gene Standard Namerps3002 Characterisation Statusbiological role inferred
Systematic IDSPBC19G7.03c Feature Typeprotein coding
Synonymsrps30, rps30-2, ysprs30 Name Description
Product40S ribosomal protein S30 (predicted) Product Size61aa, 6.91 kDa
Genomic Location Chromosome II, 2349453-2348960 (494nt); CDS:2349435-2349078 (358nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis338
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit64
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
resistance to tamoxifenrps3002Δ61
sensitive to cadmiumrps3002Δ249
viable vegetative cell populationrps3002Δ3840

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell, abnormal cell shape, normal cell sizerps3002Δ215
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2349453..2349397, 2349347..2349219, 2349095..2348960
Intron2349396..2349348, 2349218..2349096
mRNA2349453..2348960
5' UTR2349453..2349436PMID:21511999
CDS2349435..2349397, 2349347..2349219, 2349095..2349078
3' UTR2349077..2348960SPAJ2731
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04758 Pfam IPR006846 Ribosomal protein S30 3 59 2
PTHR12650 HMMPANTHER 1 61 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.28 Da
Charge 15.50
Codon Adaptation Index 0.65
Isoelectric point 12.21
Molecular weight 6.91 kDa
Number of residues 61
Modifications

Protein Modifications

Term NameResidueCount
ubiquitinylated lysineK54 512
Annotation ExtensionEvidenceResidueReference
IDA PMID:26412298
mass spectrometry evidence K54 PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rps3002 (SPBC19G7.03c)

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
35during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
4.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
ncRNA in intron16
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in archaea238
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPBC19G7.03c into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bypab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPBC19G7.03c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withmis4adherin, cohesin loading factor Mis4 Negative GeneticPMID:23050226
External References
Database Identifier Description
NBRP SPBC19G7.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC19G7.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC19G7.03c BioGRID Interaction Datasets
Expression Viewer SPBC19G7.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC19G7.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC19G7.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC19G7.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC19G7.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC19G7.03c Transcriptome Viewer (Bähler Lab)
GEO SPBC19G7.03c GEO profiles
PInt SPBC19G7.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC19G7.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC19G7.03c Fission yeast phenotypic data & analysis
Cyclebase SPBC19G7.03c.1 Cell Cycle Data
SPD / RIKEN39/39G07Orfeome Localization Data
UniProtKB/SwissProtP0CT6240S ribosomal protein S30-A
ModBaseP0CT62Database of comparative protein structure models
STRINGP0CT62Network display of known and predicted interactions and functional associations
UniProtKB/SwissProtP0CT6340S ribosomal protein S30-B
ModBaseP0CT63Database of comparative protein structure models
STRINGP0CT63Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59596940S ribosomal protein S30
RefSeq mRNANM_001021877972h- 40S ribosomal protein S30 (rps3002), mRNA

Literature for rps3002

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016