SPBC20F10.02c


Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPBC20F10.02c Feature Typeprotein coding
Synonyms Name Description
ProductDUF1741 family protein Product Size600aa, 68.95 kDa
Genomic Location Chromosome II, 3286488-3284436 (2053nt); CDS:3286420-3284618 (1803nt)

Ensembl Gene Location
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722315
GO:0016021integral component of membraneIEAUniProtKB-KW:KW-0812GO_REF:00000371018
GO:0005634nucleusIDAPMID:168233722740
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPBC20F10.02cΔNullPMID:204732893759
MicroscopySPBC20F10.02cΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001MicroscopySPBC20F10.02cΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
132864883284436

UTRs

Region Coordinates Reference
five_prime_UTR3286488..3286421PMID:21511999
three_prime_UTR3284617..3284436PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08427 Pfam IPR013636 Domain of unknown function DUF1741 381 595 1
PTHR13608:SF3 HMMPANTHER 11 595 1
PTHR13608 HMMPANTHER 11 595 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.92 Da
Charge 5.00
Isoelectric point 7.30
Molecular weight 68.95 kDa
Number of residues 600
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
274.08during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0.55during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.16during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
no apparent S. cerevisiae ortholog602
predominantly single copy (one to one)3092
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in eukaryotes only2497
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
External References
Database Identifier Description
NBRP SPBC20F10.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC20F10.02c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC20F10.02c BioGRID Interaction Datasets
Expression Viewer SPBC20F10.02c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC20F10.02c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC20F10.02c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC20F10.02c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC20F10.02c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC20F10.02c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC20F10.02c Cell Cycle Data
GEO SPBC20F10.02c GEO profiles
PInt SPBC20F10.02c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC20F10.02c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC20F10.02c Fission yeast phenotypic data & analysis
SPD / RIKEN36/36E01Orfeome Localization Data
UniProtKB/SwissProtO42972UPF0588 membrane protein C20F10.02c
ModBaseO42972Database of comparative protein structure models
STRINGO42972Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596366DUF1741 family protein
RefSeq mRNANM_001022287972h- DUF1741 family protein (SPBC20F10.02c), mRNA
European Nucleotide ArchiveCAA16842.1ENA Protein Mapping
UniParcUPI0000069F23UniProt Archive

Literature for SPBC20F10.02c

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014