SPBC20F10.02c

Gene Standard NameUnassigned ChromosomeII
Systematic IDSPBC20F10.02c Gene Start3286488
Synonyms Gene End3284436
ProductDUF1741 family protein Gene Length2053
Feature Typeprotein coding CDS Start3286420
Name Description CDS End3284618
Characterisation Statusconserved_unknown CDS Length1803

Ensembl Gene Location
  1. SPBC25H2.03
  2. trs1
  3. SPNCRNA.1590
  4. gar1
  5. SPBC20F10.02c
  6. SPBC20F10.03
  7. nse4
  8. nrl1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPBC20F10.02cdelta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
132864883284436

References

Region Start End Reference
three_prime_UTR32846173284436PMID:21511999
three_prime_UTR32846173284436PMID:21511999
five_prime_UTR32864883286421PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF08427 IPR013636 Pfam Domain of unknown function DUF1741 381 595 1
PTHR13608:SF3 hmmpanther 8 600 1
PTHR13608 hmmpanther 8 600 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.92 Da
Charge 5.00
Isoelectric point 7.30
Molecular weight 68.95 kDa
Number of residues 600
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide274.08PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.16PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide0.55PMID:23101633
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
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External References
Database Identifier Description
NBRP SPBC20F10.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC20F10.02c Retrieval of eukaryotic orthologs
BioGrid SPBC20F10.02c BioGRID Interaction Datasets
Bähler Lab SPBC20F10.02c Cell Cycle Expression Profile
Bähler Lab SPBC20F10.02c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC20F10.02c Pheromone response/mating expression profiles
Bähler Lab SPBC20F10.02c Environmental stress expression profiles
Bähler Lab SPBC20F10.02c Bähler Lab Transcriptome Viewer
Cyclebase SPBC20F10.02c Cell Cycle Data
PInt SPBC20F10.02c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC20F10.02c Entrez Gene
EntrezGene2540697DUF1741 family protein
WikiGene2540697DUF1741 family protein
SPD / RIKEN36/36E01Orfeome Localization Data
UniProtKB/SwissProtO42972UPF0588 membrane protein C20F10.02c
ModBaseO42972Database of comparative protein structure models
Pfam Protein DomainsO42972Pfam Domain Arrangement
RefSeq PeptideNP_596366DUF1741 family protein
RefSeq mRNANM_001022287972h- DUF1741 family protein (SPBC20F10.02c), mRNA
European Nucleotide ArchiveCAA16842ENA Protein Mapping
UniParcUPI0000069F23UniProt Archive

Literature for SPBC20F10.02c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013