SPBC20F10.02c


Gene Standard NameUnassigned Characterisation Statusconserved unknown
Systematic IDSPBC20F10.02c Feature Typeprotein coding
Synonyms Name Description
ProductDUF1741 family protein Product Size600aa, 68.95 kDa
Genomic Location Chromosome II, 3286488-3284436 (2053nt); CDS:3286420-3284618 (1803nt)

Ensembl Gene Location
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
integral component of membrane962
Annotation ExtensionEvidenceWith/FromReference
nucleus2692
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationSPBC20F10.02cΔ3840

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologySPBC20F10.02cΔ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3286488..3284436
mRNA3286488..3284436
5' UTR3286488..3286421PMID:21511999
CDS3286420..3284618
3' UTR3284617..3284436PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08427 Pfam IPR013636 Domain of unknown function DUF1741 388 587 1
PTHR13608:SF3 HMMPANTHER 11 595 1
PTHR13608 HMMPANTHER 11 595 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.92 Da
Charge 5.00
Codon Adaptation Index 0.39
Isoelectric point 7.30
Molecular weight 68.95 kDa
Number of residues 600
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for SPBC20F10.02c

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
274.08during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0.55during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.16during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
no apparent S. cerevisiae ortholog601
predominantly single copy (one to one)3092
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2506
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPBC20F10.02c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction witheso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
External References
Database Identifier Description
NBRP SPBC20F10.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC20F10.02c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC20F10.02c BioGRID Interaction Datasets
Expression Viewer SPBC20F10.02c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC20F10.02c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC20F10.02c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC20F10.02c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC20F10.02c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC20F10.02c Transcriptome Viewer (Bähler Lab)
GEO SPBC20F10.02c GEO profiles
PInt SPBC20F10.02c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC20F10.02c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC20F10.02c Fission yeast phenotypic data & analysis
Cyclebase SPBC20F10.02c.1 Cell Cycle Data
SPD / RIKEN36/36E01Orfeome Localization Data
UniProtKB/SwissProtO42972UPF0588 membrane protein C20F10.02c
ModBaseO42972Database of comparative protein structure models
STRINGO42972Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596366DUF1741 family protein
RefSeq mRNANM_001022287972h- DUF1741 family protein (SPBC20F10.02c), mRNA

Literature for SPBC20F10.02c

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016