SPBC21.03c

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Gene Standard NameUnassigned Characterisation Statusconserved unknown
Systematic IDSPBC21.03c Feature Typeprotein coding
Synonyms Name Description
ProductEVE domain (PUA-related) protein, bacterial S-adenosyl L-homocysteinhydrolase Product Size239aa, 28.14 kDa
Genomic Location Chromosome II, 3219354-3215872 (3483nt); CDS:3218947-3217985 (963nt)

Ensembl Gene Location
  1. mis20
  2. pmh1
  3. rrp7
  4. mis17
  5. SPBC21.03c
  6. rtc5
  7. med8
  8. ral2
  9. cdc7
  10. cdc7-antisense-1
GO Cellular Component
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Term NameCount
nucleus2690
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

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Term NameGenotypesCount
viable vegetative cell populationSPBC21.03cΔ3862

Cell Phenotype

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Term NameGenotypesCount
viable vegetative cell with normal cell morphologySPBC21.03cΔ3103
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3219354..3219218, 3219169..3219008, 3218952..3218704, 3218651..3218641, 3218491..3218467, 3218424..3215872
Intron3219217..3219170, 3219007..3218953, 3218703..3218652, 3218640..3218492, 3218466..3218425
mRNA3219354..3215872
5' UTR3219354..3219218, 3219169..3219008, 3218952..3218948PMID:21511999
CDS3218947..3218704, 3218651..3218641, 3218491..3218467, 3218424..3217985
3' UTR3217984..3215872PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01878 Pfam IPR002740 EVE domain 9 170 1
PTHR14087 HMMPANTHER 4 208 1
PTHR14087:SF7 HMMPANTHER 4 208 1
2hd9A00 Gene3D IPR002740 EVE domain 9 170 1
SSF88697 SuperFamily IPR015947 PUA-like domain 6 172 8

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.75 Da
Charge 6.00
Codon Adaptation Index 0.35
Isoelectric point 8.97
Molecular weight 28.14 kDa
Number of residues 239
Sequence
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Gene Expression
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Quantitative Gene Expression

View graphical display of gene expression data for SPBC21.03c

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.5during GO:0072690PECO:0000126,
PECO:0000005		population wideexperimental evidencePMID:23101633
0.63during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000126,
PECO:0000005		population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21511999435
Taxonomic Conservation
DescriptionQualifierReferenceCount
no apparent S. cerevisiae ortholog600
predominantly single copy (one to one)3087
conserved in fungi4608
conserved in eukaryotes4516
conserved in bacteria1005
conserved in metazoa3498
conserved in vertebrates3473
Orthologs
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Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
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Database Identifier Description
NBRP SPBC21.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC21.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC21.03c BioGRID Interaction Datasets
Expression Viewer SPBC21.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC21.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC21.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC21.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC21.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC21.03c Transcriptome Viewer (Bähler Lab)
GEO SPBC21.03c GEO profiles
PInt SPBC21.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC21.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC21.03c Fission yeast phenotypic data & analysis
Cyclebase SPBC21.03c.1 Cell Cycle Data
SPD / RIKEN13/13F09Orfeome Localization Data
UniProtKB/SwissProtO94645Uncharacterized protein C21.03c
ModBaseO94645Database of comparative protein structure models
STRINGO94645Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596337DUF55 family protein
European Nucleotide ArchiveCAB36883.3ENA Protein Mapping
UniParcUPI000228F3C0UniProt Archive

Literature for SPBC21.03c
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Search: Europe PMC or PubMed

Release Version: PomBase:30_62 - 30 Jan 2017