SPBC215.01


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPBC215.01 Feature Typeprotein coding
SynonymsSPBC3B9.20 Name Description
ProductGTPase activating protein (predicted) Product Size834aa, 95.01 kDa
Genomic Location Chromosome II, 4024162-4027252 (3091nt); CDS:4024572-4027076 (2505nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005097Rab GTPase activator activityIEAIPR000195GO_REF:000000213
GO:0005509calcium ion bindingIEAIPR002048GO_REF:000000252
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0032313regulation of Rab GTPase activityIEAIPR000195GO_REF:000000220
GO:0016192vesicle-mediated transportNASGO_REF:0000051299
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0032153cell division siteIDAPMID:16823372292
GO:0005829cytosolIDAPMID:168233722317
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000096sensitive to cadmiumcell growth assaySPBC215.01ΔNullPECO:0000102, PECO:0000005, PECO:0000137PMID:18684775244
expressivity FYPO_EXT:0000003
FYPO:0002060viable vegetative cell populationMicroscopySPBC215.01ΔNullPECO:0000005, PECO:0000137PMID:236978063755
MicroscopySPBC215.01ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphologyMicroscopySPBC215.01ΔNullPECO:0000005, PECO:0000137PMID:236978063078
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
140241624027252

UTRs

Region Start End Reference
three_prime_UTR40270774027252PMID:21511999
five_prime_UTR40241624024571PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00566 Pfam IPR000195 Rab-GTPase-TBC domain 224 428 13
SM00164 SMART IPR000195 Rab-GTPase-TBC domain 217 431 13
SM00054 SMART IPR002048 EF-hand domain 616 644 14
SM00054 SMART IPR002048 EF-hand domain 580 608 14
PS50086 Prosite Profiles IPR000195 Rab-GTPase-TBC domain 220 408 13
PS50222 Prosite Profiles IPR002048 EF-hand domain 612 647 20
PS50222 Prosite Profiles IPR002048 EF-hand domain 576 611 20
PS00018 Prosite Patterns IPR018247 EF-hand domain 625 637 12
PS00018 Prosite Patterns IPR018247 EF-hand domain 589 601 12
PTHR22957:SF94 HMMPANTHER 59 549 2
PTHR22957 HMMPANTHER 59 549 12
G3DSA:1.10.8.270 Gene3D 214 332 12
G3DSA:1.10.238.10 Gene3D IPR011992 507 673 20
SSF47473 SuperFamily 497 671 21
SSF47923 SuperFamily IPR000195 344 445 13
SSF47923 SuperFamily IPR000195 192 368 13
Low complexity (SEG) seg 782 802

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000276EF handTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000276

Protein Properties

Ave. residue weight 113.92 Da
Charge -9.00
Isoelectric point 5.67
Molecular weight 95.01 kDa
Number of residues 834
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
372.56during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
2.1during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.5during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4564
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3394
conserved in eukaryotes only2485
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ppk8serine/threonine protein kinase Ppk8 (predicted) Negative GeneticPMID:22681890
vps35retromer complex subunit Vps35 Negative GeneticPMID:22681890
vps17retromer complex subunit Vps17 Negative GeneticPMID:22681890
php5CCAAT-binding factor complex subunit Php5 Negative GeneticPMID:22681890
swd3WD repeat protein Swd3 Negative GeneticPMID:22681890
clr4histone H3 lysine methyltransferase Clr4 Negative GeneticPMID:22681890
ssm4dynactin microtubule-binding subunit, p150-Glued Ssm4 Negative GeneticPMID:22681890
SPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:22681890
ste20Rictor homolog, Ste20 Negative GeneticPMID:22681890
sty1MAP kinase Sty1 Negative GeneticPMID:22681890
vph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Negative GeneticPMID:22681890
mkh1MEK kinase (MEKK) Mkh1 Negative GeneticPMID:22681890
mug80cyclin Clg1 (predicted) Positive GeneticPMID:22681890
ptc1protein phosphatase 2C Ptc1 Negative GeneticPMID:22681890
ppk14serine/threonine protein kinase Ppk14 (predicted) Negative GeneticPMID:22681890
cbh1CENP-B homolog Cbh1 Negative GeneticPMID:22681890
tom70mitochondrial TOM complex subunit Tom70 (predicted) Negative GeneticPMID:22681890
srb10cyclin-dependent protein Srb mediator subunit kinase Srb10 Negative GeneticPMID:22681890
hip4histone promoter control protein Hip4 Negative GeneticPMID:22681890
atg13autophagy associated protein kinase regulatory subunit Atg13 Negative GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
SPBP8B7.18cphosphomethylpyrimidine kinase (predicted) Negative GeneticPMID:22681890
prw1Clr6 histone deacetylase complex subunit Prw1 Negative GeneticPMID:22681890
tps1alpha,alpha-trehalose-phosphate synthase Negative GeneticPMID:22681890
vps5retromer complex subunit Vps5 Negative GeneticPMID:22681890
hus1checkpoint clamp complex protein Hus1 Positive GeneticPMID:22681890
fft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Negative GeneticPMID:22681890
pho24-nitrophenylphosphatase Negative GeneticPMID:22681890
sum2G2/M transition checkpoint protein Sum2 Negative GeneticPMID:22681890
tsc2tuberin Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPBC215.01 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC215.01 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC215.01 BioGRID Interaction Datasets
Expression Viewer SPBC215.01 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC215.01 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC215.01 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC215.01 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC215.01 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC215.01 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC215.01 Cell Cycle Data
GEO SPBC215.01 GEO profiles
PInt SPBC215.01 Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene2540535GTPase activating protein (predicted)
EntrezGene2540535GTPase activating protein (predicted)
SPD / RIKEN29/29B02Orfeome Localization Data
UniProtKB/SwissProtO43048TBC domain-containing protein C215.01
ModBaseO43048Database of comparative protein structure models
StringO43048Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596678GTPase activating protein (predicted)
RefSeq mRNANM_001022600972h- GTPase activating protein (predicted) (SPBC215.01), mRNA
European Nucleotide ArchiveCAA17800ENA Protein Mapping
UniParcUPI000006C89FUniProt Archive

Literature for SPBC215.01

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014